printer friendly pageBIOE 32Q: Bon Appétit, Marie Curie! The Science Behind Haute Cuisine
This seminar is for anyone who loves food, cooking or science! We will focus on the science and biology behind the techniques and the taste buds. Not a single lecture will pass by without a delicious opportunity - each weekly meeting will include not only lecture, but also a lab demonstration and a chance to prepare classic dishes that illustrate that day's scientific concepts.
Terms: Spr
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Units: 3
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Grading: Letter or Credit/No Credit
Instructors:
Covert, M. (PI)
BIOE 42: Physical Biology
BIOE 42 is designed to introduce students to general engineering principles that have emerged from theory and experiments in biology. Topics covered will cover the scales from molecules to cells to organisms, including fundamental principles of entropy, diffusion, and continuum mechanics. These topics will link to several biological questions, including DNA organization, ligand binding, cytoskeletal mechanics, and the electromagnetic origin of nerve impulses. In all cases, students will learn to develop toy models that can explain quantitative measurements of the function of biological systems. Prerequisites:
MATH 19, 20, 21
CHEM 31A, B (or 31X),
PHYSICS 41; strongly recommended:
CS 106A,
CME 100 or
MATH 51, and
CME 106; or instructor approval.
Terms: Spr
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Units: 4
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UG Reqs: WAY-AQR, WAY-SMA
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Grading: Letter (ABCD/NP)
BIOE 44: Fundamentals for Engineering Biology Lab
Introduction to next-generation techniques in genetic, molecular, biochemical, and cellular engineering. Lab modules build upon current research including: gene and genome engineering via decoupled design and construction of genetic material; component engineering focusing on molecular design and quantitative analysis of experiments; device and system engineering using abstracted genetically encoded objects; and product development based on useful applications of biological technologies. Concurrent or previous enrollment in
BIO 82 or
BIO 83.
Terms: Aut, Spr
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Units: 4
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UG Reqs: WAY-SMA
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Grading: Letter (ABCD/NP)
Instructors:
Qi, S. (PI)
;
Vorster, P. (PI)
;
Kong, D. (TA)
;
Lozanoski, T. (TA)
;
Srinivasan, P. (TA)
;
Thompson, K. (TA)
;
Tieu, V. (TA)
BIOE 51: Anatomy for Bioengineers
Fundamental human anatomy, spanning major body systems and tissues including nerve, muscle, bone, cardiovascular, respiratory, gastrointestinal, and renal systems. Explore intricacies of structure and function, and how various body parts come together to form a coherent and adaptable living being. Correlate clinical conditions and therapeutic interventions. Participate in lab sessions with predissected cadaveric material and hands-on learning to gain understanding of the bioengineering human application domain. Encourage anatomical thinking, defining challenges and opportunities for bioengineers.
Terms: Spr
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Units: 4
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Grading: Letter or Credit/No Credit
BIOE 70Q: Medical Device Innovation
BIOE 70Q invites students to apply design thinking to the creation of healthcare technologies. Students will learn about the variety of factors that shape healthcare innovation, and through hands-on design projects, invent their own solutions to clinical needs. Guest instructors will include engineers, doctors, entrepreneurs, and others who have helped bring ideas from concept to clinical use.
Terms: Spr
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Units: 3
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UG Reqs: WAY-CE
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Grading: Letter (ABCD/NP)
Instructors:
Mandato, J. (PI)
;
Pierce, R. (PI)
BIOE 80: Introduction to Bioengineering (Engineering Living Matter) (ENGR 80)
Students completing BIOE.80 should have a working understanding for how to approach the systematic engineering of living systems to benefit all people and the planet. Our main goals are (1) to help students learn ways of thinking about engineering living matter and (2) to empower students to explore the broader ramifications of engineering life. Specific concepts and skills covered include but are not limited to: capacities of natural life on Earth; scope of the existing human-directed bioeconomy; deconstructing complicated problems; reaction & diffusion systems; microbial human anatomy; conceptualizing the engineering of biology; how atoms can be organized to make molecules; how to print DNA from scratch; programming genetic sensors, logic, & actuators; biology beyond molecules (photons, electrons, etc.); what constraints limit what life can do?; what will be the major health challenges in 2030?; how does what we want shape bioengineering?; who should choose and realize various competing bioengineering futures?
Terms: Spr
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Units: 4
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UG Reqs: GER:DB-EngrAppSci, WAY-FR
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Grading: Letter (ABCD/NP)
Instructors:
Endy, D. (PI)
;
Liphardt, J. (PI)
;
Benjamin, K. (TA)
...
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Instructors:
Endy, D. (PI)
;
Liphardt, J. (PI)
;
Benjamin, K. (TA)
;
Calles, J. (TA)
;
Ferris, A. (TA)
;
Seymour, A. (TA)
BIOE 103: Systems Physiology and Design
Physiology of intact human tissues, organs, and organ systems in health and disease, and bioengineering tools used (or needed) to probe and model these physiological systems. Topics: Clinical physiology, network physiology and system design/plasticity, diseases and interventions (major syndromes, simulation, and treatment, instrumentation for intervention, stimulation, diagnosis, and prevention), and new technologies including tissue engineering and optogenetics. Discussions of pathology of these systems in a clinical-case based format, with a view towards identifying unmet clinical needs. Learning computational skills that not only enable simulation of these systems but also apply more broadly to biomedical data analysis. Prerequisites:
CME 102;
PHYSICS 41;
BIO 82,
BIO 84.
Terms: Spr
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Units: 4
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UG Reqs: WAY-AQR, WAY-SMA
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Grading: Letter (ABCD/NP)
Instructors:
Deisseroth, K. (PI)
;
Rogers, K. (PI)
;
Taylor, C. (PI)
...
more instructors for BIOE 103 »
Instructors:
Deisseroth, K. (PI)
;
Rogers, K. (PI)
;
Taylor, C. (PI)
;
Filsinger Interrante, M. (TA)
;
Raffiee, M. (TA)
BIOE 103B: Systems Physiology and Design
*ONLINE Offering of
BIOE 103. This pilot class,
BIOE103B, is an entirely online offering with the same content, learning goals, and prerequisites as
BIOE 103. Students attend class by watching videos and completing assignments remotely. Students may attend recitation and office hours in person, but cannot attend the BIOE103 in-person lecture due to room capacity restraints.* Physiology of intact human tissues, organs, and organ systems in health and disease, and bioengineering tools used (or needed) to probe and model these physiological systems. Topics: Clinical physiology, network physiology and system design/plasticity, diseases and interventions (major syndromes, simulation, and treatment, instrumentation for intervention, stimulation, diagnosis, and prevention), and new technologies including tissue engineering and optogenetics. Discussions of pathology of these systems in a clinical-case based format, with a view towards identifying unmet clinical needs. Learning computational skills that not only enable simulation of these systems but also apply more broadly to biomedical data analysis. Prerequisites:
CME 102;
PHYSICS 41;
BIO 82,
BIO 84. strongly recommended
PHYSICS 43. Enrollment with Instructor approval
Terms: Spr
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Units: 4
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UG Reqs: WAY-AQR, WAY-SMA
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Grading: Letter (ABCD/NP)
Instructors:
Deisseroth, K. (PI)
BIOE 131: Ethics in Bioengineering (ETHICSOC 131X)
Bioengineering focuses on the development and application of new technologies in the biology and medicine. These technologies often have powerful effects on living systems at the microscopic and macroscopic level. They can provide great benefit to society, but they also can be used in dangerous or damaging ways. These effects may be positive or negative, and so it is critical that bioengineers understand the basic principles of ethics when thinking about how the technologies they develop can and should be applied. On a personal level, every bioengineer should understand the basic principles of ethical behavior in the professional setting. This course will involve substantial writing, and will use case-study methodology to introduce both societal and personal ethical principles, with a focus on practical applications.
Terms: Spr
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Units: 3
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UG Reqs: GER:EC-EthicReas, WAY-ER
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Grading: Letter (ABCD/NP)
Instructors:
Altman, R. (PI)
;
Magnus, D. (PI)
;
Chai, C. (TA)
;
Lensch, S. (TA)
;
Maikawa, C. (TA)
;
Patnaik, R. (TA)
;
Samuel-Gama, K. (TA)
;
Washington, P. (TA)
BIOE 191: Bioengineering Problems and Experimental Investigation
Directed study and research for undergraduates on a subject of mutual interest to student and instructor. Prerequisites: consent of instructor and adviser. (Staff)
Terms: Aut, Win, Spr, Sum
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Units: 1-5
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Repeatable for credit
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Grading: Letter or Credit/No Credit
Instructors:
Altman, R. (PI)
;
Andriacchi, T. (PI)
;
Appel, E. (PI)
...
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Instructors:
Altman, R. (PI)
;
Andriacchi, T. (PI)
;
Appel, E. (PI)
;
Bammer, R. (PI)
;
Barron, A. (PI)
;
Batzoglou, S. (PI)
;
Bintu, L. (PI)
;
Boahen, K. (PI)
;
Bryant, Z. (PI)
;
Butte, A. (PI)
;
Camarillo, D. (PI)
;
Carter, D. (PI)
;
Cochran, J. (PI)
;
Covert, M. (PI)
;
Deisseroth, K. (PI)
;
Delp, S. (PI)
;
Endy, D. (PI)
;
Fahrig, R. (PI)
;
Feinstein, J. (PI)
;
Fisher, D. (PI)
;
Fordyce, P. (PI)
;
Gambhir, S. (PI)
;
Gold, G. (PI)
;
Goodman, S. (PI)
;
Graves, E. (PI)
;
Hargreaves, B. (PI)
;
Heilshorn, S. (PI)
;
Huang, K. (PI)
;
Huang, P. (PI)
;
Kovacs, G. (PI)
;
Krummel, T. (PI)
;
Kuhl, E. (PI)
;
Lee, J. (PI)
;
Levenston, M. (PI)
;
Levin, C. (PI)
;
Lin, M. (PI)
;
Liphardt, J. (PI)
;
Longaker, M. (PI)
;
Moore, T. (PI)
;
Nuyujukian, P. (PI)
;
Pauly, K. (PI)
;
Pelc, N. (PI)
;
Plevritis, S. (PI)
;
Prakash, M. (PI)
;
Qi, S. (PI)
;
Quake, S. (PI)
;
Riedel-Kruse, I. (PI)
;
Rogers, K. (PI)
;
Sanger, T. (PI)
;
Sapolsky, R. (PI)
;
Schnitzer, M. (PI)
;
Scott, M. (PI)
;
Shenoy, K. (PI)
;
Smolke, C. (PI)
;
Spielman, D. (PI)
;
Swartz, J. (PI)
;
Taylor, C. (PI)
;
Venook, R. (PI)
;
Wall, J. (PI)
;
Wang, B. (PI)
;
Wang, P. (PI)
;
Woo, J. (PI)
;
Wu, J. (PI)
;
Yang, F. (PI)
;
Yock, P. (PI)
;
Zenios, S. (PI)
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