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31 - 40 of 46 results for: APPPHYS

APPPHYS 304: Lasers Laboratory

Theory and practice. Theoretical and descriptive background for lab experiments, detectors and noise, and lasers (helium neon, beams and resonators, argon ion, cw dye, titanium sapphire, semiconductor diode, and the Nd:YAG). Measurements of laser threshold, gain, saturation, and output power levels. Laser transverse and axial modes, linewidth and tuning, Q-switching and modelocking. Limited enrollment. Prerequisites: EE 236C and EE 332, or consent of instructor.
Last offered: Winter 2016

APPPHYS 305: Advanced Nonlinear Optics Laboratory

Core concepts and experiments in the nonlinear interaction of laser light with matter. Experiments on second harmonic generation and optical parametric oscillation culminate with assembly and use of an optical frequency comb for student-defined, open-ended experiments. Supercontinuum light generation, carrier-envelope phase stabilization, and metrology and spectroscopy. Prerequisites: APPPHYS 304, or consent of instructor.
Last offered: Autumn 2014

APPPHYS 315: Methods in Computational Biology (BIOPHYS 315)

Methods of bioinformatics and biomolecular modeling from the standpoint of biophysical chemistry. Methods of genome analysis; cluster analysis, phylogenetic trees, microarrays; protein, RNA and DNA structure and dynamics, structural and functional homology; protein-protein interactions and cellular networks; molecular dynamics methods using massively parallel algorithms.
Terms: Spr | Units: 3
Instructors: Doniach, S. (PI)

APPPHYS 324: Introduction to Accelerator Physics

Physics of particle beams in linear and circular accelerators. Transverse and longitudinal beam dynamics, equilibrium emittances in electron storage rings, high-brightness electron sources, RF acceleration and emittance preservation, bunch compression and associated collective effects, accelerator physics design for x-ray FELs, advanced accelerator concepts.
Terms: Spr | Units: 3

APPPHYS 325: X-rays: Past, Present and Future (PHOTON 325)

Introduction to the physics of bright x-ray sources. Topics include: physics and basic properties of short wavelength radiation, X-ray generation via incoherent Compton scattering and High Harmonic Generation (HHG), applications and impact of insertion devices in synchrotron radiation facilities and the development of x-ray free electron lasers. Includes selected laboratory tours of the Linac Coherent Light Source and/or measurements at SLAC. Prerequisite: graduate-level electrodynamics, or consent of instructor.
Last offered: Spring 2015

APPPHYS 345: Advanced Numerical Methods for Data Analysis and Simulation

Gaussian and unit sphere quadrature, singular value decomposition and principal component analysis, Krylov methods, non-linear fitting and super-resolution, independent component analysis, 3d reconstruction, "shrink-wrap", hidden Markov methods, support vector machines, simulated annealing, molecular dynamics and parallel tempering, Markov state methods, Monte Carlo methods for constrained systems.
Terms: Aut | Units: 3
Instructors: Doniach, S. (PI)

APPPHYS 376: Literature of Cavity QED and Cavity Optomechanics

Cavity quantum electrodynamics and optomechanics in modern quantum optics, photonics and quantum engineering. Review of basic concepts and survey of key literature in seminar format. May be repeat for credit
Terms: Win | Units: 3 | Repeatable 2 times (up to 6 units total)

APPPHYS 383: Introduction to Atomic Processes

Atomic spectroscopy, matrix elements using the Coulomb approximation, summary of Racah algebra, oscillator and line strengths, Einstein A coefficients. Radiative processes, Hamiltonian for two- and three-state systems, single- and multi-photon processes, linear and nonlinear susceptibilities, density matrix, brightness, detailed balance, and electromagnetically induced transparency. Inelastic collisions in the impact approximation, interaction potentials, Landau-Zener formulation. Continuum processes, Saha equilibrium, autoionization, and recombination.
Last offered: Spring 2016

APPPHYS 390: Dissertation Research

Terms: Aut, Win, Spr, Sum | Units: 1-15 | Repeatable for credit

APPPHYS 392: Topics in Molecular Biophysics: Biophysics of Functional RNA (BIOPHYS 392)

Survey of methods used to relate RNA sequences to the structure and function of transcribed RNA molecules. Computation of contributions of the counter-ion cloud to the dependence of free energy on conformation of the folded RNA. The relation of structure to function of riboswitches and ribozymes.
Last offered: Autumn 2015
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