BIOS 215: Stanford SKY Campus Happiness Retreat
Discover the power of the breath to reach a meditative state of mind. Combine meditation with activities that inspire connection and purpose through community building and mindful leadership. Learn through breathwork, meditation, lecture, class discussion, experiential learning, and yoga. The cornerstone of the course is evidence-based SKY Meditation technique that uses the breath to quiet the mind, supporting a deep experience of meditation and a practical approach to happiness.
Terms: Win, Spr
| Units: 1
| Repeatable
3 times
(up to 3 units total)
BIOS 216: The Practice of Reproducible Research
The course will focus on computational approaches to ensure that all data, code, and analyses can be captured in a reproducible workflow, to be confirmed and replicated by you in the future, by other members of your team, and by reviewers and other researchers. We will cover how to satisfy FAIR principles, version control, how to create a git repository, utilize Github and how to create a reproducible dataset. Prerequisites: Basic knowledge of R. Recommended (not required):
EPI 202 or 261/262,
STATS 60, or MS&E 125.
Terms: Win
| Units: 2
BIOS 219: Early Development Strategies for Neutralizing Antibodies and Brain Permeable Small Molecules
This course will provide students with an overview of current technologies related to the development of small molecules and neutralizing antibodies. Delivered via classroom instruction and a workshop, these modules will aim to increase the fundamental understanding of drug development terminology and processes, combined with real-world examples of discovery therapeutics and technologies developed for translation to clinic. Emphasis will be made on the development of small molecules that can cross the blood-brain barrier and show potential for translation in clinic. Focus will also be put on the screening of antibody targets followed by target validation, target profile development and preclinical evaluation. The workshop will focus on computational molecular docking which is an excellent tool that will help reduce the attrition rate during the drug development process and lead identification studies. Active engagement of the students during the workshop is expected based on the need to install specific software and completion of assigned tasks (computational docking). Students are expected to bring personal laptops to class on day 1 and 2 to perform docking exercises.
Terms: Win
| Units: 1
BIOS 223: Development and reporting of robust and reproducible LC-MS/MS assays
This mini-course offers a series of lectures and hands-on labs to discuss the development and reporting of reproducible quantitative LC-MS/MS molecular assays using a triple quadrupole. We will discuss chromatography and mobile phase selection, mass spectrometry parameters and selection of fragment ions, and the reporting and interpretation of published methods. Additionally we will cover the use of internal standards and sample preparation, and normalization methods for reproducible data analysis. Students will have the opportunity to work with a mass spectrometer and will design a cohesive plan for a targeted assay of an example molecule in their research.
Terms: Win
| Units: 1
BIOS 224: Stem Cell Biology and Applications
This course explores the molecular and functional characteristics of totipotent, pluripotent, multipotent, and unipotent stem cells, highlighting their diverse roles in research. This foundation will support the study of stem cell applications in developmental biology and translational research. A key focus will be on designing strategies for generating genome-edited stem cell lines and understanding the basics of epigenetics, particularly its role in cell differentiation. We will discuss major techniques for studying epigenetic changes and their research applications. Students will also gain hands-on experience using the UCSC Genome Browser as a tool to design genome editing experiments and access and visualize omics data.
Terms: Aut, Win
| Units: 2
Instructors:
Cipriano, A. (PI)
BIOS 226: Web3, AI, and Digital Health
This interdisciplinary course explores the convergence of Web3 technologies, artificial intelligence (AI), and their transformative impact on the field of digital health. Students will examine the potential of decentralized systems, blockchain, and smart contracts to enhance health data privacy, security, and interoperability. Through case studies and hands-on projects, they will gain insights into AI-driven solutions for personalized healthcare, remote patient monitoring, medical image analysis, and clinical decision support. Additionally, students will critically analyze ethical and regulatory considerations in the context of Web3 and AI applications, fostering a deeper understanding of the future of digital health innovation.
Terms: Win
| Units: 1
BIOS 227: Mass Spectrometry and Proteomics: Opening the Black Box
Focus on designing and analyzing effective proteomics experiments using mass spectrometry and critically evaluating published mass spectrometry-based studies and datasets. Introduces students to the instrumentation, experimental strategies, and computational methods used for identifying and quantifying proteins and protein post-translational modifications using mass spectrometry. Topics include comparative evaluation of mass spectrometer instrument configurations, tandem mass spectrum interpretation, relative and absolute quantitation, and proteome-scale data set analysis. Laboratory time will focus on sample preparation methods, real-time data acquisition, and data analysis software and techniques. Note: Students should sign up for the morning lecture and one of two lab sections in the afternoon.
Terms: Win
| Units: 2
BIOS 231: Public Speaking Bootcamp: How to Give a Stronger Presentation
Everyone has fears presenting in front of a crowd. But with practice, self-awareness and preparation you can put those fears aside and make a real impact with your message. Utilizing professional theater practices and tricks, this course is a deep dive into what makes a presentation work. Get a chance to explore your own presentation style and address your questions and challenges with public speaking in a safe and fun space. The course is taught by Michileen Marie Oberst, a Professional director and actor in the Bay Area whose background includes teaching at the Tony Award winning TheatreWorks Silicon Valley.
Terms: Win
| Units: 1
| Repeatable
2 times
(up to 2 units total)
BIOS 239: Science Ethics: More Than Just Experiments
We will cover the philosophical framework of bio(medical)ethics and good scientific practice in daily modules. The itinerary includes the History of Bioethics, Formal Logic, Moral Philosophy (Virtue Ethics, Utilitarianism, Deontology, Feminist Ethics), Medical & Bioethics, Animal Welfare, Good Scientific Practice, and Science Ethics.
Terms: Win, Spr
| Units: 2
BIOS 243: An Excuse to Sleep: The Science of Sleep and Health
This mini-course will explore the ¿What¿ and ¿Why¿ of sleep, with emphasis on the role of sleep in human health and wellbeing. Sleep is universal in Nature, but there is still no consensus on its function. Over 3 weeks, students will study the foundations of sleep science through a combination of lecture and discussion of published research articles. The course will approach the topic of sleep and health from multiple levels¿ brain, body, mind, and society. Topics will include: sleep and circadian physiology, sleep science methodologies, functions of sleep, and the impact of social factors on sleep health.
Terms: Win
| Units: 1
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