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IMMUNOL 199: Undergraduate Research

Presentations and discussions focus on how current research has progressed from the classic findings in Immunology. This third course in the Immunology core curriculum develops effective presentation skills that are appropriate for a given audience and situation. Students will gain experience in developing and presenting chalk talks, formal presentations, and the all-important elevator pitch on current research. Students will benefit from peer, TA and instructor feedback on all presentations.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit | Grading: Letter or Credit/No Credit

IMMUNOL 201: Advanced Immunology I

For graduate students, medical students and undergraduates. Topics include the innate and adaptive immune systems; genetics and function of immune cells and molecules; lymphocyte activation and regulation of immune responses. Recommended: undergraduate course in immunology.
Terms: Win | Units: 3 | Grading: Medical Option (Med-Ltr-CR/NC)
Instructors: ; Chien, Y. (PI); Chan, C. (SI)

IMMUNOL 202: Advanced Immunology II

Readings of immunological literature. Classic problems and emerging areas based on primary literature. Student and faculty presentations. Prerequisite: IMMUNOL 201/MI 211.
Terms: Spr | Units: 3 | Grading: Medical Option (Med-Ltr-CR/NC)
Instructors: ; Blish, C. (PI); Wang, T. (PI)

IMMUNOL 203: Advanced Immunology III

Key experiments and papers in immunology. Course focuses on the history of Immunology and how current research fits into the historical context. Students work on developing effective presentation skills.
Terms: Sum | Units: 3 | Grading: Medical Option (Med-Ltr-CR/NC)
Instructors: ; Krams, S. (PI)

IMMUNOL 205: Immunology in Health and Disease

Concepts and application of adaptive and innate immunology and the role of the immune system in human diseases. Case presentations of diseases including autoimmune diseases, infectious disease and vaccination, hematopoietic and solid organ transplantation, cancer immunotherapy, genetic and acquired immunodeficiencies, hypersensitivity reactions, and allergic diseases. Problem sets based on lectures and current clinical literature. Laboratory in acute and chronic inflammation.
Terms: Win | Units: 4 | Grading: Medical Option (Med-Ltr-CR/NC)

IMMUNOL 206: Introduction to Applied Computational Tools in Immunology

Introduction to computational tools for analyses of immunological data sets, including but not limited to single-cell data such as that from flow cytometry or CyTOF, Luminex, and genomic analyses. Students become familiar with major web-based databases and analysis suites for immunological and genomic data; gain a working knowledge of the major software/algorithms for working with major data types, and be able to apply at least one computational tool in these areas to analyze a public data set. Lectures will be followed by a demonstration and interaction session on the topic. Students will complete a computational analysis project and present it to the class.
Terms: Win | Units: 2 | Grading: Medical Option (Med-Ltr-CR/NC)

IMMUNOL 207: Essential Methods in Computational and Systems Immunology

Introduction to the major underpinnings of systems immunology: first principles of development of computational approaches to immunological questions and research; details of the algorithms and statistical principles underlying commonly used tools; aspects of study design and analysis of data sets. Prerequisites: CS106a and CS161 strongly recommended.
Terms: Spr | Units: 3 | Grading: Medical Option (Med-Ltr-CR/NC)

IMMUNOL 209: Translational Immunology

Open to medical students (regardless of whether they are in foundations or applications), graduate students, and undergraduates (by consent of instructor). The format is a seminar series with weekly lectures from Immunology Faculty and guest speakers focusing on current basic immunology research and how it is translated into immunotherapies and clinical trials. Topics include hematopoiesis, transplantation, tolerance, immune monitoring, vaccination, autoimmunity and antibodies, rheumatoid arthritis, chronic pulmonary disease, and asthma. Med students in the immunology concentration major are allowed to take Imm 209 repeatedly for credit. Lunch is provided.
Terms: Win, Spr | Units: 1 | Repeatable for credit | Grading: Medical Option (Med-Ltr-CR/NC)
Instructors: ; Bollyky, P. (PI)

IMMUNOL 210: Immunology Research Seminars for Medical Students

Required for medical students selecting the Immunology Concentration. Attendance at a minimum of ten seminars related to immunology outside of required medical school classes. A one-page essay on each seminar, what was presented and how it relates to a clinical immunologic problem, is required.
Terms: Aut, Win, Spr | Units: 2 | Repeatable for credit | Grading: Medical School MD Grades
Instructors: ; Bollyky, P. (PI)

IMMUNOL 275: Tumor Immunology (CBIO 275)

Tumor Immunology focuses on the mechanisms by which tumors can escape from and subvert the immune system and conversely on the ability of innate and adaptive arms of the immune system to recognize and eliminate tumors. Topics include: tumor antigens, tumor immunosurveillance and immunoediting, tumor immunotherapy (including CAR-T and checkpoint antibodies) and cancer vaccines. Tracks the historical development of our understanding of modulating tumor immune response and discusses their relative significance in the light of current reserach findings. Prerequisite: for undergraduates, human biology or biology core.
Terms: Spr | Units: 3 | Grading: Medical Option (Med-Ltr-CR/NC)

IMMUNOL 280: Early Clinical Experience in Immunology

Clinical observation experience for medical students in the Immunology Scholarly Concentration. At the end of the observation period, which may span over one to two quarters, the student submits a case observation paper to his/her faculty sponsor. Prerequisite: IMMUNOL 205.
Terms: Aut, Win, Spr, Sum | Units: 1-3 | Repeatable for credit | Grading: Medical School MD Grades

IMMUNOL 286: Neuroimmunity

Focus is on the homeostatic and pathogenic interactions between the immune and central nervous system. Topics include the role of immune cells and inflammatory mediators in the physiological functions, neural development, neuroexcitation, and the pathogenic impact of inflammatory responses. Prerequisite of Molecular and Cellular Immunology (Bio 230) or Advanced Immunology (Immunol 201). Otherwise, request permission from the course director to enroll.
Terms: Win | Units: 2-3 | Grading: Medical Option (Med-Ltr-CR/NC)

IMMUNOL 290: Teaching in Immunology

Practical experience in teaching by serving as a teaching assistant in an immunology course. Unit values are allotted individually to reflect the level of teaching responsibility assigned to the student. May be repeated for credit.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit | Grading: Medical Option (Med-Ltr-CR/NC)

IMMUNOL 299: Directed Reading in Immunology

Prerequisite: consent of instructor.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit | Grading: Medical Option (Med-Ltr-CR/NC)

IMMUNOL 305: Immunology Journal Club

Required of first- to third-year graduate students. Graduate students present and discuss recent papers in the literature. May be repeated for credit.
Terms: Aut, Win, Spr | Units: 1 | Repeatable for credit | Grading: Medical Option (Med-Ltr-CR/NC)

IMMUNOL 310: Seminars in Computational and Systems Immunology

Presentation of CSI technologies from recent literature. Discussion of emerging application areas and limitations. Dissemination of computational resources.
Terms: Sum | Units: 1 | Repeatable for credit | Grading: Medical Option (Med-Ltr-CR/NC)

IMMUNOL 311: Seminar in Immunology

Enrollment limited to Ph.D., M.D./Ph.D., and medical students whose scholarly concentrations are in Immunology. Current research topics.
Terms: Aut, Win, Spr | Units: 1 | Repeatable for credit | Grading: Medical Option (Med-Ltr-CR/NC)

IMMUNOL 399: Graduate Research

For Ph.D., M.D./Ph.D. students, and medical students whose scholarly concentrations are in Immunology.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit | Grading: Medical Option (Med-Ltr-CR/NC)
Instructors: ; Aghaeepour, N. (PI); Alizadeh, A. (PI); Altman, R. (PI); Andreasson, K. (PI); Angelo, R. (PI); Arvin, A. (PI); Bacchetta, R. (PI); Bendall, S. (PI); Bertaina, A. (PI); Bertozzi, C. (PI); Blish, C. (PI); Bollyky, P. (PI); Boothroyd, J. (PI); Boyd, S. (PI); Butcher, E. (PI); Chan, C. (PI); Chen, C. (PI); Chien, Y. (PI); Chu, G. (PI); Cleary, M. (PI); Cochran, J. (PI); Crabtree, G. (PI); Czechowicz, A. (PI); Davis, M. (PI); Davis, R. (PI); Engleman, E. (PI); Fathman, C. (PI); Felsher, D. (PI); Fire, A. (PI); Fontaine, M. (PI); Fraser, H. (PI); Galli, S. (PI); Garcia, C. (PI); Gentles, A. (PI); Goronzy, J. (PI); Greenleaf, W. (PI); Habtezion, A. (PI); Han, M. (PI); Herzenberg, L. (PI); Hsieh, M. (PI); Idoyaga, J. (PI); Jagannathan, P. (PI); Jaiswal, S. (PI); Jardetzky, T. (PI); Jones, P. (PI); Khatri, P. (PI); Khodadoust, M. (PI); Kim, P. (PI); Kirkegaard, K. (PI); Kohrt, H. (PI); Krams, S. (PI); Kuo, C. (PI); Lee, P. (PI); Levy, R. (PI); Levy, S. (PI); Lewis, D. (PI); Lewis, R. (PI); Li, L. (PI); Mackall, C. (PI); Maecker, H. (PI); Majeti, R. (PI); Mallick, P. (PI); Maltzman, J. (PI); Martinez, O. (PI); McDevitt, H. (PI); Mellins, E. (PI); Meyer, E. (PI); Michie, S. (PI); Mignot, E. (PI); Miklos, D. (PI); Monack, D. (PI); Montgomery, S. (PI); Nadeau, K. (PI); Nayak, J. (PI); Negrin, R. (PI); Newman, A. (PI); Nicolls, M. (PI); Nolan, G. (PI); Palmer, T. (PI); Parham, P. (PI); Pulendran, B. (PI); Quake, S. (PI); Robinson, B. (PI); Roncarolo, M. (PI); Sarwal, M. (PI); Schneider, D. (PI); Shafer, R. (PI); Shizuru, J. (PI); Snyder, M. (PI); Sobel, R. (PI); Steinman, L. (PI); Strober, S. (PI); Sunwoo, J. (PI); Tibshirani, R. (PI); Utz, P. (PI); Wang, T. (PI); Weissman, I. (PI); Weyand, C. (PI); Winslow, M. (PI); Wu, J. (PI); Wyss-Coray, T. (PI); Jones, D. (GP); Nguyen, T. (GP); O'Neal, A. (GP)

IMMUNOL 801: TGR Project

Terms: Aut, Win, Spr, Sum | Units: 0 | Repeatable for credit | Grading: TGR

IMMUNOL 802: TGR Dissertation

Terms: Aut, Win, Spr, Sum | Units: 0 | Repeatable for credit | Grading: TGR
Instructors: ; Alizadeh, A. (PI); Angelo, R. (PI); Arvin, A. (PI); Bendall, S. (PI); Bertozzi, C. (PI); Blish, C. (PI); Bollyky, P. (PI); Boothroyd, J. (PI); Boyd, S. (PI); Butcher, E. (PI); Butte, A. (PI); Butte, M. (PI); Chen, C. (PI); Chien, Y. (PI); Chu, G. (PI); Cleary, M. (PI); Contag, C. (PI); Crabtree, G. (PI); Davis, M. (PI); Dhabhar, F. (PI); Engleman, E. (PI); Fathman, C. (PI); Felsher, D. (PI); Fire, A. (PI); Fontaine, M. (PI); Galli, S. (PI); Garcia, C. (PI); Gentles, A. (PI); Goronzy, J. (PI); Habtezion, A. (PI); Han, M. (PI); Herzenberg, L. (PI); Hsieh, M. (PI); Idoyaga, J. (PI); Jardetzky, T. (PI); Jones, P. (PI); Khatri, P. (PI); Kim, P. (PI); Kirkegaard, K. (PI); Kohrt, H. (PI); Krams, S. (PI); Kuo, C. (PI); Lee, P. (PI); Levy, R. (PI); Levy, S. (PI); Lewis, D. (PI); Lewis, R. (PI); Mackall, C. (PI); Maecker, H. (PI); Majeti, R. (PI); Mallick, P. (PI); Martinez, O. (PI); McDevitt, H. (PI); Mellins, E. (PI); Meyer, E. (PI); Michie, S. (PI); Mignot, E. (PI); Miklos, D. (PI); Monack, D. (PI); Nadeau, K. (PI); Nayak, J. (PI); Negrin, R. (PI); Nicolls, M. (PI); Nolan, G. (PI); Palmer, T. (PI); Parham, P. (PI); Quake, S. (PI); Robinson, B. (PI); Roncarolo, M. (PI); Sarwal, M. (PI); Schneider, D. (PI); Shafer, R. (PI); Shizuru, J. (PI); Snyder, M. (PI); Sobel, R. (PI); Steinman, L. (PI); Strober, S. (PI); Sunwoo, J. (PI); Utz, P. (PI); Wang, T. (PI); Weissman, I. (PI); Weyand, C. (PI); Wu, J. (PI); Wyss-Coray, T. (PI); Jones, D. (GP); Nguyen, T. (GP); O'Neal, A. (GP)
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