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BIOPHYS 196: INTERACTIVE MEDIA AND GAMES (BIOE 196)

Interactive media and games increasingly pervade and shape our society. In addition to their dominant roles in entertainment, video games play growing roles in education, arts, and science. This seminar series brings together a diverse set of experts to provide interdisciplinary perspectives on these media regarding their history, technologies, scholarly research, industry, artistic value, and potential future.
Terms: Aut, Win, Spr | Units: 1 | Repeatable 3 times (up to 3 units total)
Instructors: Riedel-Kruse, I. (PI)

BIOPHYS 244: Mechanotransduction in Cells and Tissues (BIOE 283, ME 244)

Mechanical cues play a critical role in development, normal functioning of cells and tissues, and various diseases. This course will cover what is known about cellular mechanotransduction, or the processes by which living cells sense and respond to physical cues such as physiological forces or mechanical properties of the tissue microenvironment. Experimental techniques and current areas of active investigation will be highlighted.
Terms: Aut | Units: 3
Instructors: Chaudhuri, O. (PI) ; Nam, S. (TA)

BIOPHYS 250: Seminar in Biophysics

Required of Biophysics graduate students. Presentation of current research projects and results by faculty in the Biophysics program. May be repeated for credit.
Terms: Aut | Units: 1 | Repeatable for credit
Instructors: Weis, W. (PI)

BIOPHYS 279: Computational Biology: Structure and Organization of Biomolecules and Cells (BIOE 279, BIOMEDIN 279, CME 279, CS 279)

Computational techniques for investigating and designing the three-dimensional structure and dynamics of biomolecules and cells. These computational methods play an increasingly important role in drug discovery, medicine, bioengineering, and molecular biology. Course topics include protein structure prediction, protein design, drug screening, molecular simulation, cellular-level simulation, image analysis for microscopy, and methods for solving structures from crystallography and electron microscopy data. Prerequisites: elementary programming background ( CS 106A or equivalent) and an introductory course in biology or biochemistry.
Terms: Aut | Units: 3
Instructors: Dror, R. (PI) ; El-Gabalawy, O. (TA) ; Ma, A. (TA)

BIOPHYS 300: Graduate Research

Investigations sponsored by individual faculty members. Prerequisite: consent of instructor.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit
Instructors: Airan, R. (PI) ; Altman, R. (PI) ; Barron, A. (PI) ; Bintu, L. (PI) ; Block, S. (PI) ; Boettiger, A. (PI) ; Boxer, S. (PI) ; Brandman, O. (PI) ; Brunger, A. (PI) ; Bryant, Z. (PI) ; Butte, M. (PI) ; Cegelski, L. (PI) ; Chaudhuri, O. (PI) ; Chen, X. (PI) ; Chu, G. (PI) ; Chu, S. (PI) ; Cochran, J. (PI) ; Cui, B. (PI) ; Dabiri, J. (PI) ; Das, R. (PI) ; Davis, M. (PI) ; Doniach, S. (PI) ; Dror, R. (PI) ; Dunn, A. (PI) ; Feng, L. (PI) ; Ferrell, J. (PI) ; Fisher, D. (PI) ; Fordyce, P. (PI) ; Frydman, J. (PI) ; Garcia, C. (PI) ; Glover, G. (PI) ; Goodman, M. (PI) ; Greenleaf, W. (PI) ; Hanawalt, P. (PI) ; Harbury, P. (PI) ; Herschlag, D. (PI) ; Hodgson, K. (PI) ; Huang, K. (PI) ; Huang, P. (PI) ; Jardetzky, T. (PI) ; Khosla, C. (PI) ; Kim, P. (PI) ; Kobilka, B. (PI) ; Kool, E. (PI) ; Kopito, R. (PI) ; Kornberg, R. (PI) ; Kundaje, A. (PI) ; Levin, C. (PI) ; Levitt, M. (PI) ; Lewis, R. (PI) ; Li, J. (PI) ; Li, L. (PI) ; Liphardt, J. (PI) ; Long, S. (PI) ; Maduke, M. (PI) ; Meyer, T. (PI) ; Moerner, W. (PI) ; Pande, V. (PI) ; Pelc, N. (PI) ; Prakash, M. (PI) ; Pruitt, B. (PI) ; Puglisi, J. (PI) ; Quake, S. (PI) ; Rao, J. (PI) ; Riedel-Kruse, I. (PI) ; Salzman, J. (PI) ; Schnitzer, M. (PI) ; Skotheim, J. (PI) ; Smith, S. (PI) ; Solomon, E. (PI) ; Spakowitz, A. (PI) ; Spudich, J. (PI) ; Tang, S. (PI) ; Teruel, M. (PI) ; Theriot, J. (PI) ; Ting, A. (PI) ; Wagner, A. (PI) ; Wandless, T. (PI) ; Wang, B. (PI) ; Weis, W. (PI) ; Zare, R. (PI) ; de la Zerda, A. (PI)

BIOPHYS 399: Directed Reading in Biophysics

Prerequisite: consent of instructor.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit
Instructors: Airan, R. (PI) ; Altman, R. (PI) ; Barron, A. (PI) ; Bintu, L. (PI) ; Block, S. (PI) ; Boettiger, A. (PI) ; Boxer, S. (PI) ; Brandman, O. (PI) ; Brunger, A. (PI) ; Bryant, Z. (PI) ; Butte, M. (PI) ; Cegelski, L. (PI) ; Chaudhuri, O. (PI) ; Chen, X. (PI) ; Chu, G. (PI) ; Chu, S. (PI) ; Cochran, J. (PI) ; Cui, B. (PI) ; Dabiri, J. (PI) ; Das, R. (PI) ; Davis, M. (PI) ; Doniach, S. (PI) ; Dror, R. (PI) ; Dunn, A. (PI) ; Feng, L. (PI) ; Ferrell, J. (PI) ; Fisher, D. (PI) ; Fordyce, P. (PI) ; Frydman, J. (PI) ; Garcia, C. (PI) ; Glover, G. (PI) ; Goodman, M. (PI) ; Greenleaf, W. (PI) ; Hanawalt, P. (PI) ; Harbury, P. (PI) ; Herschlag, D. (PI) ; Hodgson, K. (PI) ; Huang, K. (PI) ; Huang, P. (PI) ; Jardetzky, T. (PI) ; Khosla, C. (PI) ; Kim, P. (PI) ; Kobilka, B. (PI) ; Kool, E. (PI) ; Kopito, R. (PI) ; Kornberg, R. (PI) ; Kundaje, A. (PI) ; Levin, C. (PI) ; Levitt, M. (PI) ; Lewis, R. (PI) ; Li, J. (PI) ; Li, L. (PI) ; Liphardt, J. (PI) ; Long, S. (PI) ; Maduke, M. (PI) ; Meyer, T. (PI) ; Moerner, W. (PI) ; Pande, V. (PI) ; Pelc, N. (PI) ; Prakash, M. (PI) ; Pruitt, B. (PI) ; Puglisi, J. (PI) ; Quake, S. (PI) ; Rao, J. (PI) ; Riedel-Kruse, I. (PI) ; Salzman, J. (PI) ; Schnitzer, M. (PI) ; Skotheim, J. (PI) ; Smith, S. (PI) ; Solomon, E. (PI) ; Spakowitz, A. (PI) ; Spudich, J. (PI) ; Tang, S. (PI) ; Teruel, M. (PI) ; Theriot, J. (PI) ; Ting, A. (PI) ; Wandless, T. (PI) ; Wang, B. (PI) ; Weis, W. (PI) ; Zare, R. (PI) ; de la Zerda, A. (PI)

BIOPHYS 801: TGR Project

Terms: Aut, Win, Spr, Sum | Units: 0 | Repeatable for credit
Instructors: Airan, R. (PI) ; Altman, R. (PI) ; Barron, A. (PI) ; Bintu, L. (PI) ; Block, S. (PI) ; Boettiger, A. (PI) ; Boxer, S. (PI) ; Brandman, O. (PI) ; Brunger, A. (PI) ; Bryant, Z. (PI) ; Butte, M. (PI) ; Cegelski, L. (PI) ; Chaudhuri, O. (PI) ; Chen, X. (PI) ; Chu, G. (PI) ; Chu, S. (PI) ; Cochran, J. (PI) ; Cui, B. (PI) ; Dabiri, J. (PI) ; Das, R. (PI) ; Davis, M. (PI) ; Doniach, S. (PI) ; Dror, R. (PI) ; Dunn, A. (PI) ; Feng, L. (PI) ; Ferrell, J. (PI) ; Fisher, D. (PI) ; Fordyce, P. (PI) ; Frydman, J. (PI) ; Garcia, C. (PI) ; Glover, G. (PI) ; Goodman, M. (PI) ; Greenleaf, W. (PI) ; Hanawalt, P. (PI) ; Harbury, P. (PI) ; Herschlag, D. (PI) ; Hodgson, K. (PI) ; Huang, K. (PI) ; Huang, P. (PI) ; Jardetzky, T. (PI) ; Khosla, C. (PI) ; Kim, P. (PI) ; Kobilka, B. (PI) ; Kool, E. (PI) ; Kopito, R. (PI) ; Kornberg, R. (PI) ; Kundaje, A. (PI) ; Levin, C. (PI) ; Levitt, M. (PI) ; Lewis, R. (PI) ; Li, J. (PI) ; Li, L. (PI) ; Liphardt, J. (PI) ; Long, S. (PI) ; Maduke, M. (PI) ; Meyer, T. (PI) ; Moerner, W. (PI) ; Pande, V. (PI) ; Pelc, N. (PI) ; Prakash, M. (PI) ; Pruitt, B. (PI) ; Puglisi, J. (PI) ; Quake, S. (PI) ; Rao, J. (PI) ; Riedel-Kruse, I. (PI) ; Salzman, J. (PI) ; Schnitzer, M. (PI) ; Skotheim, J. (PI) ; Smith, S. (PI) ; Solomon, E. (PI) ; Spakowitz, A. (PI) ; Spudich, J. (PI) ; Tang, S. (PI) ; Teruel, M. (PI) ; Theriot, J. (PI) ; Ting, A. (PI) ; Wandless, T. (PI) ; Wang, B. (PI) ; Weis, W. (PI) ; Zare, R. (PI) ; de la Zerda, A. (PI)

BIOPHYS 802: TGR Dissertation

Terms: Aut, Win, Spr, Sum | Units: 0 | Repeatable for credit
Instructors: Airan, R. (PI) ; Altman, R. (PI) ; Barron, A. (PI) ; Bintu, L. (PI) ; Block, S. (PI) ; Boettiger, A. (PI) ; Boxer, S. (PI) ; Brandman, O. (PI) ; Brunger, A. (PI) ; Bryant, Z. (PI) ; Butte, M. (PI) ; Cegelski, L. (PI) ; Chaudhuri, O. (PI) ; Chen, X. (PI) ; Chu, G. (PI) ; Chu, S. (PI) ; Cochran, J. (PI) ; Cui, B. (PI) ; Dabiri, J. (PI) ; Das, R. (PI) ; Davis, M. (PI) ; Doniach, S. (PI) ; Dror, R. (PI) ; Dunn, A. (PI) ; Feng, L. (PI) ; Ferrell, J. (PI) ; Fisher, D. (PI) ; Fordyce, P. (PI) ; Frydman, J. (PI) ; Garcia, C. (PI) ; Glover, G. (PI) ; Goodman, M. (PI) ; Greenleaf, W. (PI) ; Hanawalt, P. (PI) ; Harbury, P. (PI) ; Herschlag, D. (PI) ; Hodgson, K. (PI) ; Huang, K. (PI) ; Huang, P. (PI) ; Jardetzky, T. (PI) ; Khosla, C. (PI) ; Kim, P. (PI) ; Kobilka, B. (PI) ; Kool, E. (PI) ; Kopito, R. (PI) ; Kornberg, R. (PI) ; Kundaje, A. (PI) ; Levin, C. (PI) ; Levitt, M. (PI) ; Lewis, R. (PI) ; Li, J. (PI) ; Li, L. (PI) ; Liphardt, J. (PI) ; Long, S. (PI) ; Maduke, M. (PI) ; Meyer, T. (PI) ; Moerner, W. (PI) ; Pande, V. (PI) ; Pelc, N. (PI) ; Prakash, M. (PI) ; Pruitt, B. (PI) ; Puglisi, J. (PI) ; Quake, S. (PI) ; Rao, J. (PI) ; Riedel-Kruse, I. (PI) ; Salzman, J. (PI) ; Schnitzer, M. (PI) ; Skotheim, J. (PI) ; Smith, S. (PI) ; Solomon, E. (PI) ; Spakowitz, A. (PI) ; Spudich, J. (PI) ; Tang, S. (PI) ; Teruel, M. (PI) ; Theriot, J. (PI) ; Ting, A. (PI) ; Wandless, T. (PI) ; Wang, B. (PI) ; Weis, W. (PI) ; Zare, R. (PI) ; de la Zerda, A. (PI)
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