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IMMUNOL 199: Undergraduate Research

Presentations and discussions focus on how current research has progressed from the classic findings in Immunology. This third course in the Immunology core curriculum develops effective presentation skills that are appropriate for a given audience and situation. Students will gain experience in developing and presenting chalk talks, formal presentations, and the all-important elevator pitch on current research. Students will benefit from peer, TA and instructor feedback on all presentations.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit
Instructors: Alizadeh, A. (PI) ; Arvin, A. (PI) ; Bendall, S. (PI) ; Blish, C. (PI) ; Bollyky, P. (PI) ; Boothroyd, J. (PI) ; Boyd, S. (PI) ; Butcher, E. (PI) ; Butte, A. (PI) ; Butte, M. (PI) ; Chen, C. (PI) ; Chien, Y. (PI) ; Chu, G. (PI) ; Cleary, M. (PI) ; Contag, C. (PI) ; Crabtree, G. (PI) ; Davis, M. (PI) ; Dhabhar, F. (PI) ; Engleman, E. (PI) ; Fathman, C. (PI) ; Felsher, D. (PI) ; Fire, A. (PI) ; Fontaine, M. (PI) ; Galli, S. (PI) ; Garcia, C. (PI) ; Goronzy, J. (PI) ; Habtezion, A. (PI) ; Han, M. (PI) ; Herzenberg, L. (PI) ; Herzenberg, L. (PI) ; Hsieh, M. (PI) ; Idoyaga, J. (PI) ; Jardetzky, T. (PI) ; Jones, P. (PI) ; Khatri, P. (PI) ; Kim, P. (PI) ; Kirkegaard, K. (PI) ; Kohrt, H. (PI) ; Krams, S. (PI) ; Kuo, C. (PI) ; Lee, P. (PI) ; Levy, R. (PI) ; Levy, S. (PI) ; Lewis, D. (PI) ; Lewis, R. (PI) ; Mackall, C. (PI) ; Maecker, H. (PI) ; Majeti, R. (PI) ; Mallick, P. (PI) ; Martinez, O. (PI) ; McDevitt, H. (PI) ; Mellins, E. (PI) ; Meyer, E. (PI) ; Michie, S. (PI) ; Mignot, E. (PI) ; Miklos, D. (PI) ; Monack, D. (PI) ; Nadeau, K. (PI) ; Nayak, J. (PI) ; Negrin, R. (PI) ; Nicolls, M. (PI) ; Nolan, G. (PI) ; Palmer, T. (PI) ; Parham, P. (PI) ; Quake, S. (PI) ; Robinson, B. (PI) ; Roncarolo, M. (PI) ; Sarwal, M. (PI) ; Schneider, D. (PI) ; Shafer, R. (PI) ; Shizuru, J. (PI) ; Snyder, M. (PI) ; Sobel, R. (PI) ; Steinman, L. (PI) ; Strober, S. (PI) ; Sunwoo, J. (PI) ; Utz, P. (PI) ; Weissman, I. (PI) ; Weyand, C. (PI) ; Winslow, M. (PI) ; Wu, J. (PI) ; Wu, J. (PI) ; Wyss-Coray, T. (PI)

IMMUNOL 208: Advanced Computational and Systems Immunology

Focus is on first principles and methods of advanced computational and systems immunology that are used in the analysis of protein and nucleic acid sequences, protein structures, and immunological processes. Students learn to write computational algorithms for sequence alignment, motif finding, expression array analysis, structural modeling, structure design and prediction, and network analysis and modeling. Students become familiar with the technologies used in CSI, which include dynamic programming, Markov and hidden Markov models, Bayesian networks, clustering methods, and energy minimization approaches. Designed for students with strong foundations in either immunology or computer science . Prerequisites: lmmunol 207, CS 109 and CS 161.
Terms: Aut | Units: 3

IMMUNOL 210: Immunology Research Seminars for Medical Students

Required for medical students selecting the Immunology Concentration. Attendance at a minimum of ten seminars related to immunology outside of required medical school classes. A one-page essay on each seminar, what was presented and how it relates to a clinical immunologic problem, is required.
Terms: Aut, Win, Spr | Units: 2 | Repeatable for credit
Instructors: Miklos, D. (PI)

IMMUNOL 280: Early Clinical Experience in Immunology

Clinical observation experience for medical students in the Immunology Scholarly Concentration. At the end of the observation period, which may span over one to two quarters, the student submits a case observation paper to his/her faculty sponsor. Prerequisite: IMMUNOL 205.
Terms: Aut, Win, Spr, Sum | Units: 1-3 | Repeatable for credit
Instructors: Alizadeh, A. (PI) ; Arvin, A. (PI) ; Bendall, S. (PI) ; Blish, C. (PI) ; Bollyky, P. (PI) ; Boothroyd, J. (PI) ; Boyd, S. (PI) ; Butcher, E. (PI) ; Butte, A. (PI) ; Butte, M. (PI) ; Chen, C. (PI) ; Chien, Y. (PI) ; Chu, G. (PI) ; Cleary, M. (PI) ; Contag, C. (PI) ; Crabtree, G. (PI) ; Davis, M. (PI) ; Dhabhar, F. (PI) ; Engleman, E. (PI) ; Fathman, C. (PI) ; Felsher, D. (PI) ; Fire, A. (PI) ; Fontaine, M. (PI) ; Galli, S. (PI) ; Garcia, C. (PI) ; Goronzy, J. (PI) ; Habtezion, A. (PI) ; Han, M. (PI) ; Herzenberg, L. (PI) ; Herzenberg, L. (PI) ; Hsieh, M. (PI) ; Idoyaga, J. (PI) ; Jardetzky, T. (PI) ; Jones, P. (PI) ; Khatri, P. (PI) ; Kim, P. (PI) ; Kirkegaard, K. (PI) ; Kohrt, H. (PI) ; Krams, S. (PI) ; Kuo, C. (PI) ; Lee, P. (PI) ; Levy, R. (PI) ; Levy, S. (PI) ; Lewis, D. (PI) ; Lewis, R. (PI) ; Maecker, H. (PI) ; Majeti, R. (PI) ; Mallick, P. (PI) ; Martinez, O. (PI) ; McDevitt, H. (PI) ; Mellins, E. (PI) ; Meyer, E. (PI) ; Michie, S. (PI) ; Mignot, E. (PI) ; Miklos, D. (PI) ; Monack, D. (PI) ; Nadeau, K. (PI) ; Nayak, J. (PI) ; Negrin, R. (PI) ; Nicolls, M. (PI) ; Nolan, G. (PI) ; Palmer, T. (PI) ; Parham, P. (PI) ; Quake, S. (PI) ; Robinson, B. (PI) ; Roncarolo, M. (PI) ; Sarwal, M. (PI) ; Schneider, D. (PI) ; Shafer, R. (PI) ; Shizuru, J. (PI) ; Snyder, M. (PI) ; Sobel, R. (PI) ; Steinman, L. (PI) ; Strober, S. (PI) ; Sunwoo, J. (PI) ; Utz, P. (PI) ; Weissman, I. (PI) ; Weyand, C. (PI) ; Wu, J. (PI) ; Wu, J. (PI) ; Wyss-Coray, T. (PI)

IMMUNOL 290: Teaching in Immunology

Practical experience in teaching by serving as a teaching assistant in an immunology course. Unit values are allotted individually to reflect the level of teaching responsibility assigned to the student. May be repeated for credit.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit
Instructors: Alizadeh, A. (PI) ; Arvin, A. (PI) ; Bendall, S. (PI) ; Blish, C. (PI) ; Bollyky, P. (PI) ; Boothroyd, J. (PI) ; Boyd, S. (PI) ; Butcher, E. (PI) ; Butte, A. (PI) ; Butte, M. (PI) ; Chen, C. (PI) ; Chien, Y. (PI) ; Chu, G. (PI) ; Cleary, M. (PI) ; Contag, C. (PI) ; Crabtree, G. (PI) ; Davis, M. (PI) ; Dhabhar, F. (PI) ; Engleman, E. (PI) ; Fathman, C. (PI) ; Felsher, D. (PI) ; Fire, A. (PI) ; Fontaine, M. (PI) ; Galli, S. (PI) ; Garcia, C. (PI) ; Goronzy, J. (PI) ; Habtezion, A. (PI) ; Han, M. (PI) ; Herzenberg, L. (PI) ; Herzenberg, L. (PI) ; Hsieh, M. (PI) ; Idoyaga, J. (PI) ; Jardetzky, T. (PI) ; Jones, P. (PI) ; Khatri, P. (PI) ; Kim, P. (PI) ; Kirkegaard, K. (PI) ; Kohrt, H. (PI) ; Krams, S. (PI) ; Kuo, C. (PI) ; Lee, P. (PI) ; Levy, R. (PI) ; Levy, S. (PI) ; Lewis, D. (PI) ; Lewis, R. (PI) ; Maecker, H. (PI) ; Majeti, R. (PI) ; Mallick, P. (PI) ; Martinez, O. (PI) ; McDevitt, H. (PI) ; Mellins, E. (PI) ; Meyer, E. (PI) ; Michie, S. (PI) ; Mignot, E. (PI) ; Miklos, D. (PI) ; Monack, D. (PI) ; Nadeau, K. (PI) ; Nayak, J. (PI) ; Negrin, R. (PI) ; Nicolls, M. (PI) ; Nolan, G. (PI) ; Palmer, T. (PI) ; Parham, P. (PI) ; Quake, S. (PI) ; Robinson, B. (PI) ; Roncarolo, M. (PI) ; Sarwal, M. (PI) ; Schneider, D. (PI) ; Shafer, R. (PI) ; Shizuru, J. (PI) ; Snyder, M. (PI) ; Sobel, R. (PI) ; Steinman, L. (PI) ; Strober, S. (PI) ; Sunwoo, J. (PI) ; Utz, P. (PI) ; Weissman, I. (PI) ; Weyand, C. (PI) ; Wu, J. (PI) ; Wu, J. (PI) ; Wyss-Coray, T. (PI)

IMMUNOL 299: Directed Reading in Immunology

Prerequisite: consent of instructor.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit
Instructors: Alizadeh, A. (PI) ; Arvin, A. (PI) ; Bendall, S. (PI) ; Blish, C. (PI) ; Bollyky, P. (PI) ; Boothroyd, J. (PI) ; Boyd, S. (PI) ; Butcher, E. (PI) ; Butte, A. (PI) ; Butte, M. (PI) ; Chen, C. (PI) ; Chien, Y. (PI) ; Chu, G. (PI) ; Cleary, M. (PI) ; Contag, C. (PI) ; Crabtree, G. (PI) ; Davis, M. (PI) ; Dhabhar, F. (PI) ; Engleman, E. (PI) ; Fathman, C. (PI) ; Felsher, D. (PI) ; Fire, A. (PI) ; Fontaine, M. (PI) ; Galli, S. (PI) ; Garcia, C. (PI) ; Goronzy, J. (PI) ; Habtezion, A. (PI) ; Han, M. (PI) ; Herzenberg, L. (PI) ; Herzenberg, L. (PI) ; Hsieh, M. (PI) ; Idoyaga, J. (PI) ; Jardetzky, T. (PI) ; Jones, P. (PI) ; Khatri, P. (PI) ; Kim, P. (PI) ; Kirkegaard, K. (PI) ; Kohrt, H. (PI) ; Krams, S. (PI) ; Kuo, C. (PI) ; Lee, P. (PI) ; Levy, R. (PI) ; Levy, S. (PI) ; Lewis, D. (PI) ; Lewis, R. (PI) ; Maecker, H. (PI) ; Majeti, R. (PI) ; Mallick, P. (PI) ; Martinez, O. (PI) ; McDevitt, H. (PI) ; Mellins, E. (PI) ; Meyer, E. (PI) ; Michie, S. (PI) ; Mignot, E. (PI) ; Miklos, D. (PI) ; Monack, D. (PI) ; Nadeau, K. (PI) ; Nayak, J. (PI) ; Negrin, R. (PI) ; Nicolls, M. (PI) ; Nolan, G. (PI) ; Palmer, T. (PI) ; Parham, P. (PI) ; Quake, S. (PI) ; Robinson, B. (PI) ; Roncarolo, M. (PI) ; Sarwal, M. (PI) ; Schneider, D. (PI) ; Shafer, R. (PI) ; Shizuru, J. (PI) ; Snyder, M. (PI) ; Sobel, R. (PI) ; Steinman, L. (PI) ; Strober, S. (PI) ; Sunwoo, J. (PI) ; Utz, P. (PI) ; Weissman, I. (PI) ; Weyand, C. (PI) ; Wu, J. (PI) ; Wu, J. (PI) ; Wyss-Coray, T. (PI)

IMMUNOL 305: Immunology Journal Club

Required of first- to third-year graduate students. Graduate students present and discuss recent papers in the literature. May be repeated for credit.
Terms: Aut, Win, Spr | Units: 1 | Repeatable for credit
Instructors: Martinez, O. (PI)

IMMUNOL 311: Seminar in Immunology

Enrollment limited to Ph.D., M.D./Ph.D., and medical students whose scholarly concentrations are in Immunology. Current research topics.
Terms: Aut, Win, Spr | Units: 1 | Repeatable for credit
Instructors: Alizadeh, A. (PI) ; Martinez, O. (PI)

IMMUNOL 311A: Discussions in Immunology

Students discuss papers of speakers in 311, and meet with the speakers. Corequisite: 311.
Terms: Aut, Win, Spr | Units: 1 | Repeatable for credit
Instructors: Martinez, O. (PI) ; Rothbard, J. (PI)

IMMUNOL 399: Graduate Research

For Ph.D., M.D./Ph.D. students, and medical students whose scholarly concentrations are in Immunology.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit
Instructors: Alizadeh, A. (PI) ; Angelo, M. (PI) ; Arvin, A. (PI) ; Bendall, S. (PI) ; Blish, C. (PI) ; Bollyky, P. (PI) ; Boothroyd, J. (PI) ; Boyd, S. (PI) ; Butcher, E. (PI) ; Butte, A. (PI) ; Butte, M. (PI) ; Chen, C. (PI) ; Chien, Y. (PI) ; Chu, G. (PI) ; Cleary, M. (PI) ; Contag, C. (PI) ; Crabtree, G. (PI) ; Davis, M. (PI) ; Dhabhar, F. (PI) ; Engleman, E. (PI) ; Fathman, C. (PI) ; Felsher, D. (PI) ; Fire, A. (PI) ; Fontaine, M. (PI) ; Galli, S. (PI) ; Garcia, C. (PI) ; Gentles, A. (PI) ; Goronzy, J. (PI) ; Habtezion, A. (PI) ; Han, M. (PI) ; Herzenberg, L. (PI) ; Herzenberg, L. (PI) ; Hsieh, M. (PI) ; Idoyaga, J. (PI) ; Jardetzky, T. (PI) ; Jones, P. (PI) ; Khatri, P. (PI) ; Kim, P. (PI) ; Kirkegaard, K. (PI) ; Kohrt, H. (PI) ; Krams, S. (PI) ; Kuo, C. (PI) ; Lee, P. (PI) ; Levy, R. (PI) ; Levy, S. (PI) ; Lewis, D. (PI) ; Lewis, R. (PI) ; Mackall, C. (PI) ; Maecker, H. (PI) ; Majeti, R. (PI) ; Mallick, P. (PI) ; Martinez, O. (PI) ; McDevitt, H. (PI) ; Mellins, E. (PI) ; Meyer, E. (PI) ; Michie, S. (PI) ; Mignot, E. (PI) ; Miklos, D. (PI) ; Monack, D. (PI) ; Nadeau, K. (PI) ; Nayak, J. (PI) ; Negrin, R. (PI) ; Nicolls, M. (PI) ; Nolan, G. (PI) ; Palmer, T. (PI) ; Parham, P. (PI) ; Quake, S. (PI) ; Robinson, B. (PI) ; Roncarolo, M. (PI) ; Sarwal, M. (PI) ; Schneider, D. (PI) ; Shafer, R. (PI) ; Shizuru, J. (PI) ; Snyder, M. (PI) ; Sobel, R. (PI) ; Steinman, L. (PI) ; Strober, S. (PI) ; Sunwoo, J. (PI) ; Utz, P. (PI) ; Wang, T. (PI) ; Weissman, I. (PI) ; Weyand, C. (PI) ; Winslow, M. (PI) ; Wu, J. (PI) ; Wu, J. (PI) ; Wyss-Coray, T. (PI)
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