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BIOMEDIN 201: Biomedical Informatics Student Seminar (BIODS 201)

Participants report on recent articles from the Biomedical Informatics literature or their research projects. Goals are to teach critical reading of scientific papers and presentation skills. Summer Quarter consists of critical review of relevant literature led by faculty associated with the Biomedical Informatics Program. May be repeated three times for credit.
Terms: Aut, Win, Spr, Sum | Units: 1 | Repeatable 3 times (up to 3 units total)

BIOMEDIN 290: Biomedical Informatics Teaching Methods

Hands-on training in biomedical informatics pedagogy. Practical experience in pedagogical approaches, variously including didactic, inquiry, project, team, case, field, and/or problem-based approaches. Students create course content, including lectures, exercises, and assessments, and evaluate learning activities and outcomes. Prerequisite: instructor consent.
Terms: Aut, Win, Spr, Sum | Units: 1-6 | Repeatable 2 times (up to 12 units total)
Instructors: Altman, R. (PI) ; Ashley, E. (PI) ; Bassik, M. (PI) ; Batzoglou, S. (PI) ; Bayati, M. (PI) ; Bejerano, G. (PI) ; Bhattacharya, J. (PI) ; Blish, C. (PI) ; Boahen, K. (PI) ; Brandeau, M. (PI) ; Bustamante, C. (PI) ; Butte, A. (PI) ; Chang, H. (PI) ; Cherry, J. (PI) ; Cohen, S. (PI) ; Covert, M. (PI) ; Curtis, C. (PI) ; Das, A. (PI) ; Das, R. (PI) ; Davis, R. (PI) ; Delp, S. (PI) ; Desai, M. (PI) ; Dill, D. (PI) ; Dumontier, M. (PI) ; Elias, J. (PI) ; Fagan, L. (PI) ; Feldman, M. (PI) ; Ferrell, J. (PI) ; Fraser, H. (PI) ; Gerritsen, M. (PI) ; Gevaert, O. (PI) ; Goldstein, M. (PI) ; Greenleaf, W. (PI) ; Guibas, L. (PI) ; Hastie, T. (PI) ; Hlatky, M. (PI) ; Holmes, S. (PI) ; Ji, H. (PI) ; Karp, P. (PI) ; Khatri, P. (PI) ; Kim, S. (PI) ; Kirkegaard, K. (PI) ; Klein, T. (PI) ; Koller, D. (PI) ; Krummel, T. (PI) ; Kundaje, A. (PI) ; Levitt, M. (PI) ; Levitt, R. (PI) ; Li, J. (PI) ; Longhurst, C. (PI) ; Lowe, H. (PI) ; Mallick, P. (PI) ; Manning, C. (PI) ; McAdams, H. (PI) ; Menon, V. (PI) ; Montgomery, S. (PI) ; Musen, M. (PI) ; Napel, S. (PI) ; Nolan, G. (PI) ; Olshen, R. (PI) ; Owen, A. (PI) ; Owens, D. (PI) ; Paik, D. (PI) ; Palacios, J. (PI) ; Pande, V. (PI) ; Petrov, D. (PI) ; Plevritis, S. (PI) ; Poldrack, R. (PI) ; Pritchard, J. (PI) ; Relman, D. (PI) ; Rivas, M. (PI) ; Rubin, D. (PI) ; Sabatti, C. (PI) ; Salzman, J. (PI) ; Shachter, R. (PI) ; Shafer, R. (PI) ; Shah, N. (PI) ; Sherlock, G. (PI) ; Sidow, A. (PI) ; Snyder, M. (PI) ; Tang, H. (PI) ; Taylor, C. (PI) ; Tibshirani, R. (PI) ; Utz, P. (PI) ; Walker, M. (PI) ; Wall, D. (PI) ; Winograd, T. (PI) ; Wong, W. (PI) ; Xing, L. (PI) ; Zou, J. (PI)

BIOMEDIN 299: Directed Reading and Research

For students wishing to receive credit for directed reading or research time. Prerequisite: consent of instructor. (Staff)
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit
Instructors: Aghaeepour, N. (PI) ; Alarid Escudero, F. (PI) ; Altman, R. (PI) ; Ashley, E. (PI) ; Baiocchi, M. (PI) ; Bassik, M. (PI) ; Batzoglou, S. (PI) ; Bayati, M. (PI) ; Bejerano, G. (PI) ; Bendavid, E. (PI) ; Bhattacharya, J. (PI) ; Blish, C. (PI) ; Boahen, K. (PI) ; Brandeau, M. (PI) ; Bustamante, C. (PI) ; Butte, A. (PI) ; Chang, H. (PI) ; Chaudhari, A. (PI) ; Chen, J. (PI) ; Cherry, J. (PI) ; Cohen, S. (PI) ; Covert, M. (PI) ; Das, A. (PI) ; Das, R. (PI) ; Davis, R. (PI) ; Delp, S. (PI) ; Desai, M. (PI) ; Dill, D. (PI) ; Dror, R. (PI) ; Dumontier, M. (PI) ; Elias, J. (PI) ; Engelhardt, B. (PI) ; Fagan, L. (PI) ; Feldman, M. (PI) ; Ferrell, J. (PI) ; Fraser, H. (PI) ; Gentles, A. (PI) ; Gerritsen, M. (PI) ; Gevaert, O. (PI) ; Goldstein, M. (PI) ; Greenleaf, W. (PI) ; Guibas, L. (PI) ; Hastie, T. (PI) ; Hernandez-Boussard, T. (PI) ; Hlatky, M. (PI) ; Holmes, S. (PI) ; Jerby, L. (PI) ; Ji, H. (PI) ; Karp, P. (PI) ; Khatri, P. (PI) ; Kim, S. (PI) ; Kirkegaard, K. (PI) ; Klein, T. (PI) ; Koller, D. (PI) ; Krummel, T. (PI) ; Kundaje, A. (PI) ; Langlotz, C. (PI) ; Leskovec, J. (PI) ; Levitt, M. (PI) ; Li, J. (PI) ; Longhurst, C. (PI) ; Lowe, H. (PI) ; Lu, Y. (PI) ; Mallick, P. (PI) ; Manning, C. (PI) ; McAdams, H. (PI) ; Menon, V. (PI) ; Montgomery, S. (PI) ; Musen, M. (PI) ; Napel, S. (PI) ; Nolan, G. (PI) ; Owen, A. (PI) ; Owens, D. (PI) ; Paik, D. (PI) ; Palacios, J. (PI) ; Palaniappan, L. (PI) ; Pande, V. (PI) ; Petrov, D. (PI) ; Plevritis, S. (PI) ; Pohl, K. (PI) ; Poldrack, R. (PI) ; Pritchard, J. (PI) ; Relman, D. (PI) ; Rivas, M. (PI) ; Rose, S. (PI) ; Ross, E. (PI) ; Rubin, D. (PI) ; Sabatti, C. (PI) ; Salzman, J. (PI) ; Shachter, R. (PI) ; Shafer, R. (PI) ; Shah, N. (PI) ; Sherlock, G. (PI) ; Sidow, A. (PI) ; Snyder, M. (PI) ; Tang, H. (PI) ; Taylor, C. (PI) ; Tibshirani, R. (PI) ; Tu, S. (PI) ; Utz, P. (PI) ; Walker, M. (PI) ; Wall, D. (PI) ; Winograd, T. (PI) ; Witte, J. (PI) ; Wong, W. (PI) ; Xing, L. (PI) ; Yeung, S. (PI) ; Zou, J. (PI)

BIOMEDIN 370: Medical Scholars Research

Provides an opportunity for student and faculty interaction, as well as academic credit and financial support, to medical students who undertake original research. Enrollment is limited to students with approved projects.
Terms: Aut, Win, Spr, Sum | Units: 4-18 | Repeatable for credit
Instructors: Altman, R. (PI) ; Ashley, E. (PI) ; Bassik, M. (PI) ; Batzoglou, S. (PI) ; Bayati, M. (PI) ; Bejerano, G. (PI) ; Bhattacharya, J. (PI) ; Blish, C. (PI) ; Boahen, K. (PI) ; Brandeau, M. (PI) ; Bustamante, C. (PI) ; Butte, A. (PI) ; Chang, H. (PI) ; Chen, J. (PI) ; Cherry, J. (PI) ; Cohen, S. (PI) ; Covert, M. (PI) ; Das, A. (PI) ; Das, R. (PI) ; Davis, R. (PI) ; Delp, S. (PI) ; Desai, M. (PI) ; Dill, D. (PI) ; Dror, R. (PI) ; Dumontier, M. (PI) ; Elias, J. (PI) ; Fagan, L. (PI) ; Feldman, M. (PI) ; Ferrell, J. (PI) ; Fraser, H. (PI) ; Gerritsen, M. (PI) ; Gevaert, O. (PI) ; Goldstein, M. (PI) ; Greenleaf, W. (PI) ; Guibas, L. (PI) ; Hastie, T. (PI) ; Hlatky, M. (PI) ; Holmes, S. (PI) ; Ji, H. (PI) ; Karp, P. (PI) ; Khatri, P. (PI) ; Kim, S. (PI) ; Kirkegaard, K. (PI) ; Klein, T. (PI) ; Koller, D. (PI) ; Krummel, T. (PI) ; Kundaje, A. (PI) ; Levitt, M. (PI) ; Li, J. (PI) ; Longhurst, C. (PI) ; Lowe, H. (PI) ; Mallick, P. (PI) ; Manning, C. (PI) ; McAdams, H. (PI) ; Menon, V. (PI) ; Montgomery, S. (PI) ; Musen, M. (PI) ; Napel, S. (PI) ; Nolan, G. (PI) ; Owen, A. (PI) ; Owens, D. (PI) ; Paik, D. (PI) ; Palacios, J. (PI) ; Pande, V. (PI) ; Petrov, D. (PI) ; Plevritis, S. (PI) ; Poldrack, R. (PI) ; Pritchard, J. (PI) ; Relman, D. (PI) ; Rivas, M. (PI) ; Rubin, D. (PI) ; Sabatti, C. (PI) ; Salomon, J. (PI) ; Salzman, J. (PI) ; Shachter, R. (PI) ; Shafer, R. (PI) ; Shah, N. (PI) ; Sherlock, G. (PI) ; Sidow, A. (PI) ; Snyder, M. (PI) ; Tang, H. (PI) ; Taylor, C. (PI) ; Tibshirani, R. (PI) ; Tu, S. (PI) ; Utz, P. (PI) ; Walker, M. (PI) ; Wall, D. (PI) ; Winograd, T. (PI) ; Wong, W. (PI) ; Xing, L. (PI) ; Zou, J. (PI)

BIOMEDIN 390A: Curricular Practical Training

Provides educational opportunities in biomedical informatics research. Qualified biomedical informatics students engage in internship work and integrate that work into their academic program. Students register during the quarter they are employed and must complete a research report outlining their work activity, problems investigated, key results, and any follow-up on projects they expect to perform. BIOMEDIN 390A, B, and C may each be taken only once.
Terms: Aut, Win, Spr, Sum | Units: 1
Instructors: Musen, M. (PI) ; Tian, L. (PI)

BIOMEDIN 390B: Curricular Practical Training

Provides educational opportunities in biomedical informatics research. Qualified biomedical informatics students engage in internship work and integrate that work into their academic program. Students register during the quarter they are employed and must complete a research report outlining their work activity, problems investigated, key results, and any follow-up on projects they expect to perform. BIOMEDIN 390A, B, and C may each be taken only once.
Terms: Aut, Win, Spr, Sum | Units: 1
Instructors: Musen, M. (PI) ; Tian, L. (PI)

BIOMEDIN 390C: Curricular Practical Training

Provides educational opportunities in biomedical informatics research. Qualified biomedical informatics students engage in internship work and integrate that work into their academic program. Students register during the quarter they are employed and must complete a research report outlining their work activity, problems investigated, key results, and any follow-up on projects they expect to perform. BIOMEDIN 390A, B, and C may each be taken only once.
Terms: Aut, Win, Spr, Sum | Units: 1
Instructors: Musen, M. (PI) ; Tian, L. (PI)

BIOMEDIN 801: TGR Master's Project

Project credit for masters students who have completed all course requirements and minimum of 45 Stanford units.
Terms: Aut, Win, Spr, Sum | Units: 0 | Repeatable for credit
Instructors: Altman, R. (PI) ; Ashley, E. (PI) ; Bassik, M. (PI) ; Batzoglou, S. (PI) ; Bayati, M. (PI) ; Bejerano, G. (PI) ; Bhattacharya, J. (PI) ; Blish, C. (PI) ; Boahen, K. (PI) ; Brandeau, M. (PI) ; Bustamante, C. (PI) ; Butte, A. (PI) ; Chang, H. (PI) ; Cherry, J. (PI) ; Cohen, S. (PI) ; Covert, M. (PI) ; Das, A. (PI) ; Das, R. (PI) ; Davis, R. (PI) ; Delp, S. (PI) ; Desai, M. (PI) ; Dill, D. (PI) ; Dumontier, M. (PI) ; Elias, J. (PI) ; Fagan, L. (PI) ; Feldman, M. (PI) ; Ferrell, J. (PI) ; Fraser, H. (PI) ; Gentles, A. (PI) ; Gerritsen, M. (PI) ; Gevaert, O. (PI) ; Goldstein, M. (PI) ; Greenleaf, W. (PI) ; Guibas, L. (PI) ; Hastie, T. (PI) ; Hlatky, M. (PI) ; Holmes, S. (PI) ; Ji, H. (PI) ; Karp, P. (PI) ; Khatri, P. (PI) ; Kim, S. (PI) ; Kirkegaard, K. (PI) ; Klein, T. (PI) ; Koller, D. (PI) ; Krummel, T. (PI) ; Kundaje, A. (PI) ; Levitt, M. (PI) ; Li, J. (PI) ; Longhurst, C. (PI) ; Lowe, H. (PI) ; Lu, Y. (PI) ; Mallick, P. (PI) ; Manning, C. (PI) ; McAdams, H. (PI) ; Menon, V. (PI) ; Montgomery, S. (PI) ; Musen, M. (PI) ; Napel, S. (PI) ; Nolan, G. (PI) ; Owen, A. (PI) ; Owens, D. (PI) ; Paik, D. (PI) ; Palacios, J. (PI) ; Pande, V. (PI) ; Petrov, D. (PI) ; Plevritis, S. (PI) ; Poldrack, R. (PI) ; Pritchard, J. (PI) ; Relman, D. (PI) ; Rivas, M. (PI) ; Rubin, D. (PI) ; Sabatti, C. (PI) ; Salzman, J. (PI) ; Shachter, R. (PI) ; Shafer, R. (PI) ; Shah, N. (PI) ; Sherlock, G. (PI) ; Sidow, A. (PI) ; Snyder, M. (PI) ; Tang, H. (PI) ; Taylor, C. (PI) ; Tian, L. (PI) ; Tibshirani, R. (PI) ; Tu, S. (PI) ; Utz, P. (PI) ; Walker, M. (PI) ; Wall, D. (PI) ; Winograd, T. (PI) ; Wong, W. (PI) ; Xing, L. (PI) ; Zou, J. (PI)

BIOMEDIN 802: TGR PhD Dissertation

Terms: Aut, Win, Spr, Sum | Units: 0 | Repeatable for credit
Instructors: Aghaeepour, N. (PI) ; Altman, R. (PI) ; Ashley, E. (PI) ; Baiocchi, M. (PI) ; Bassik, M. (PI) ; Batzoglou, S. (PI) ; Bayati, M. (PI) ; Bejerano, G. (PI) ; Bhattacharya, J. (PI) ; Blish, C. (PI) ; Boahen, K. (PI) ; Brandeau, M. (PI) ; Bustamante, C. (PI) ; Butte, A. (PI) ; Chang, H. (PI) ; Chaudhari, A. (PI) ; Cherry, J. (PI) ; Cohen, S. (PI) ; Covert, M. (PI) ; Das, A. (PI) ; Das, R. (PI) ; Davis, R. (PI) ; Delp, S. (PI) ; Desai, M. (PI) ; Dill, D. (PI) ; Dumontier, M. (PI) ; Elias, J. (PI) ; Fagan, L. (PI) ; Feldman, M. (PI) ; Ferrell, J. (PI) ; Fraser, H. (PI) ; Gerritsen, M. (PI) ; Gevaert, O. (PI) ; Goldstein, M. (PI) ; Greenleaf, W. (PI) ; Guibas, L. (PI) ; Hastie, T. (PI) ; Hlatky, M. (PI) ; Holmes, S. (PI) ; Ji, H. (PI) ; Karp, P. (PI) ; Khatri, P. (PI) ; Kim, S. (PI) ; Kirkegaard, K. (PI) ; Klein, T. (PI) ; Koller, D. (PI) ; Krummel, T. (PI) ; Kundaje, A. (PI) ; Leskovec, J. (PI) ; Levitt, M. (PI) ; Li, J. (PI) ; Longhurst, C. (PI) ; Lowe, H. (PI) ; Mallick, P. (PI) ; Manning, C. (PI) ; McAdams, H. (PI) ; Menon, V. (PI) ; Montgomery, S. (PI) ; Musen, M. (PI) ; Napel, S. (PI) ; Nolan, G. (PI) ; Owen, A. (PI) ; Owens, D. (PI) ; Paik, D. (PI) ; Palacios, J. (PI) ; Pande, V. (PI) ; Petrov, D. (PI) ; Plevritis, S. (PI) ; Poldrack, R. (PI) ; Pritchard, J. (PI) ; Rehkopf, D. (PI) ; Relman, D. (PI) ; Rivas, M. (PI) ; Rubin, D. (PI) ; Sabatti, C. (PI) ; Salzman, J. (PI) ; Shachter, R. (PI) ; Shafer, R. (PI) ; Shah, N. (PI) ; Sherlock, G. (PI) ; Sidow, A. (PI) ; Snyder, M. (PI) ; Tang, H. (PI) ; Taylor, C. (PI) ; Tian, L. (PI) ; Tibshirani, R. (PI) ; Tu, S. (PI) ; Utz, P. (PI) ; Walker, M. (PI) ; Wall, D. (PI) ; Winograd, T. (PI) ; Wong, W. (PI) ; Xing, L. (PI) ; Yeung, S. (PI) ; Zou, J. (PI)
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