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BIOE 390: Introduction to Bioengineering Research (MED 289)

Preference to medical and bioengineering graduate students with first preference given to Bioengineering Scholarly Concentration medical students. Bioengineering is an interdisciplinary field that leverages the disciplines of biology, medicine, and engineering to understand living systems, and engineer biological systems and improve engineering designs and human and environmental health. Students and faculty make presentations during the course. Students expected to make presentations, complete a short paper, read selected articles, and take quizzes on the material.
Terms: Aut | Units: 1-2 | Repeatable 5 times (up to 10 units total)
Instructors: Narayan, S. (PI) ; Wang, P. (PI) ; Yang, Y. (PI)

BIOE 391: Directed Study

May be used to prepare for research during a later quarter in 392. Faculty sponsor required. May be repeated for credit.
Terms: Aut, Win, Spr, Sum | Units: 1-6 | Repeatable for credit

BIOE 392: Directed Investigation

For Bioengineering graduate students. Previous work in 391 may be required for background; faculty sponsor required. May be repeated for credit.
Terms: Aut, Win, Spr, Sum | Units: 1-10 | Repeatable for credit
Instructors: Alizadeh, A. (PI) ; Altman, R. (PI) ; Andriacchi, T. (PI) ; Appel, E. (PI) ; Bammer, R. (PI) ; Bao, Z. (PI) ; Barron, A. (PI) ; Batzoglou, S. (PI) ; Bertozzi, C. (PI) ; Boahen, K. (PI) ; Bryant, Z. (PI) ; Butte, A. (PI) ; Camarillo, D. (PI) ; Carter, D. (PI) ; Cheng, C. (PI) ; Chichilnisky, E. (PI) ; Cochran, J. (PI) ; Covert, M. (PI) ; Dabiri, J. (PI) ; Dahl, J. (PI) ; Deisseroth, K. (PI) ; Delp, S. (PI) ; Endy, D. (PI) ; Engleman, E. (PI) ; Etkin, A. (PI) ; Fahrig, R. (PI) ; Feinstein, J. (PI) ; Feng, L. (PI) ; Fire, A. (PI) ; Fordyce, P. (PI) ; Gambhir, S. (PI) ; Garcia, C. (PI) ; Gold, G. (PI) ; Goodman, S. (PI) ; Graves, E. (PI) ; Greenleaf, W. (PI) ; Hargreaves, B. (PI) ; Heilshorn, S. (PI) ; Herschlag, D. (PI) ; Huang, K. (PI) ; Jonikas, M. (PI) ; Khuri-Yakub, B. (PI) ; Kim, P. (PI) ; Kovacs, G. (PI) ; Krasnow, M. (PI) ; Krummel, T. (PI) ; Kuhl, E. (PI) ; Lee, J. (PI) ; Levenston, M. (PI) ; Levin, C. (PI) ; Lin, M. (PI) ; Liphardt, J. (PI) ; Longaker, M. (PI) ; Marsden, A. (PI) ; Moore, T. (PI) ; Nishimura, D. (PI) ; Nolan, G. (PI) ; O'Brien, L. (PI) ; Okamura, A. (PI) ; Pauly, J. (PI) ; Pauly, K. (PI) ; Pelc, N. (PI) ; Plevritis, S. (PI) ; Prakash, M. (PI) ; Pruitt, B. (PI) ; Qi, S. (PI) ; Quake, S. (PI) ; Rando, T. (PI) ; Raymond, J. (PI) ; Reijo Pera, R. (PI) ; Relman, D. (PI) ; Riedel-Kruse, I. (PI) ; Sapolsky, R. (PI) ; Sattely, E. (PI) ; Schnitzer, M. (PI) ; Scott, M. (PI) ; Shenoy, K. (PI) ; Smolke, C. (PI) ; Soh, H. (PI) ; Spielman, D. (PI) ; Swartz, J. (PI) ; Taylor, C. (PI) ; Wang, B. (PI) ; Woo, J. (PI) ; Wu, J. (PI) ; Wu, S. (PI) ; Yang, F. (PI) ; Yang, Y. (PI) ; Yock, P. (PI) ; Zenios, S. (PI)

BIOE 393: Bioengineering Departmental Research Colloquium

Bioengineering department labs at Stanford present recent research projects and results. Guest lecturers. Topics include applications of engineering to biology, medicine, biotechnology, and medical technology, including biodesign and devices, molecular and cellular engineering, regenerative medicine and tissue engineering, biomedical imaging, and biomedical computation. Aut, Win, Spr (Lin, Riedel-Kruse, Barron)
Terms: Aut, Win, Spr | Units: 1 | Repeatable for credit
Instructors: Liphardt, J. (PI) ; Riedel-Kruse, I. (PI)

BIOE 450: Advances in Biotechnology (CHEMENG 450)

Guest academic and industrial speakers. Latest developments in fields such as bioenergy, green process technology, production of industrial chemicals from renewable resources, protein pharmaceutical production, industrial enzyme production, stem cell applications, medical diagnostics, and medical imaging. Biotechnology ethics, business and patenting issues, and entrepreneurship in biotechnology.
Terms: Spr | Units: 3
Instructors: Swartz, J. (PI)

BIOE 454: Synthetic Biology and Metabolic Engineering (CHEMENG 454)

Principles for the design and optimization of new biological systems. Development of new enzymes, metabolic pathways, other metabolic systems, and communication systems among organisms. Example applications include the production of central metabolites, amino acids, pharmaceutical proteins, and isoprenoids. Economic challenges and quantitative assessment of metabolic performance. Pre- or corequisite: CHEMENG 355 or equivalent.
Last offered: Spring 2013

BIOE 459: Frontiers in Interdisciplinary Biosciences (BIO 459, BIOC 459, CHEM 459, CHEMENG 459, PSYCH 459)

Students register through their affiliated department; otherwise register for CHEMENG 459. For specialists and non-specialists. Sponsored by the Stanford BioX Program. Three seminars per quarter address scientific and technical themes related to interdisciplinary approaches in bioengineering, medicine, and the chemical, physical, and biological sciences. Leading investigators from Stanford and the world present breakthroughs and endeavors that cut across core disciplines. Pre-seminars introduce basic concepts and background for non-experts. Registered students attend all pre-seminars; others welcome. See http://biox.stanford.edu/courses/459.html. Recommended: basic mathematics, biology, chemistry, and physics.
Terms: Aut, Win, Spr | Units: 1 | Repeatable for credit
Instructors: Robertson, C. (PI)

BIOE 484: Computational Methods in Cardiovascular Bioengineering (ME 484)

Lumped parameter, one-dimensional nonlinear and linear wave propagation, and three-dimensional modeling techniques applied to simulate blood flow in the cardiovascular system and evaluate the performance of cardiovascular devices. Construction of anatomic models and extraction of physiologic quantities from medical imaging data. Problems in blood flow within the context of disease research, device design, and surgical planning.
Last offered: Spring 2010

BIOE 485: Modeling and Simulation of Human Movement (ME 485)

Direct experience with the computational tools used to create simulations of human movement. Lecture/labs on animation of movement; kinematic models of joints; forward dynamic simulation; computational models of muscles, tendons, and ligaments; creation of models from medical images; control of dynamic simulations; collision detection and contact models. Prerequisite: 281, 331A,B, or equivalent.
Terms: Spr | Units: 3

BIOE 500: Thesis (Ph.D.)

(Staff)
Terms: Aut, Win, Spr, Sum | Units: 1-15 | Repeatable for credit
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