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91 - 100 of 142 results for: all courses

HUMBIO 51: Big Data for Biologists - Decoding Genomic Function

Biology and medicine are becoming increasingly data-intensive fields. This course is designed to introduce students interested in human biology and related fields to methods for working with large biological datasets. There will be in-class activities analyzing real data that have revealed insights about the role of the genome and epigenome in health and disease. For example, we will explore data from large-scale gene expression and chromatin state studies. The course will provide an introduction to the relevant topics in biology and to fundamental computational skills such as editing text files, formatting and storing data, visualizing data and writing data analysis scripts. Students will become familiar with both UNIX and Python. This course is designed at the introductory level. Previous university-level courses in biology and programming experience are not required.
Terms: Aut | Units: 3 | UG Reqs: WAY-AQR | Grading: Letter or Credit/No Credit

HUMBIO 85A: Essential Statistics for Human Biology (BIO 108)

Introduction to statistical concepts and methods that are essential to the study of questions in biology, environment, health and related areas. The course will teach and use the computer language R and Python (you learn both, choose one). Topics include distributions, probabilities, likelihood, linear models; illustrations will be based on recent research.
Terms: not given this year, last offered Spring 2016 | Units: 4 | UG Reqs: WAY-AQR | Grading: Letter (ABCD/NP)

HUMBIO 88: Introduction to Statistics for the Health Sciences

Students will learn the statistical tools used to describe and analyze data in the fields of medicine and epidemiology. This very applied course will rely on current research questions and publicly available data. Students will gain proficiency with Stata to do basic analyses of health-related data, including linear and logistic regression, and will become sophisticated consumers of health-related statistical results.
Terms: Win | Units: 4 | UG Reqs: GER:DB-Math, WAY-AQR | Grading: Letter (ABCD/NP)

HUMBIO 89: Statistics in the Health Sciences

This course aims to provide a firm grounding in the foundations of probability and statistics, with a focus on analyzing data from the health sciences. Students will learn how to read, interpret, and critically evaluate the statistics in medical and biological studies. The course also prepares students to be able to analyze their own data, guiding them on how to choose the correct statistical test, avoid common statistical pitfalls, and perform basic functions in R deducer. Cardinal Course certified by the Haas Center.
Terms: Aut, Win, Spr | Units: 3 | UG Reqs: GER:DB-Math, WAY-AQR | Grading: Letter or Credit/No Credit

HUMBIO 154A: Engineering Better Health Systems: modeling for public health (HRP 234, MED 254)

This course teaches engineering, operations research and modeling techniques to improve public health programs and systems. Students will engage in in-depth study of disease detection and control strategies from a "systems science" perspective, which involves the use of common engineering, operations research, and mathematical modeling techniques such as optimization, queuing theory, Markov and Kermack-McKendrick models, and microsimulation. Lectures and problem sets will focus on applying these techniques to classical public health dilemmas such as how to optimize screening programs, reduce waiting times for healthcare services, solve resource allocation problems, and compare macro-scale disease control strategies that cannot be easily evaluated through randomized trials. Readings will complement the lectures and problem sets by offering critical perspectives from the public health history, sociology, and epidemiology. In-depth case studies from non-governmental organizations, departm more »
This course teaches engineering, operations research and modeling techniques to improve public health programs and systems. Students will engage in in-depth study of disease detection and control strategies from a "systems science" perspective, which involves the use of common engineering, operations research, and mathematical modeling techniques such as optimization, queuing theory, Markov and Kermack-McKendrick models, and microsimulation. Lectures and problem sets will focus on applying these techniques to classical public health dilemmas such as how to optimize screening programs, reduce waiting times for healthcare services, solve resource allocation problems, and compare macro-scale disease control strategies that cannot be easily evaluated through randomized trials. Readings will complement the lectures and problem sets by offering critical perspectives from the public health history, sociology, and epidemiology. In-depth case studies from non-governmental organizations, departments of public health, and international agencies will drive the course. Prerequisites: A course in introductory statistics, and a course in multivariable calculus including ordinarily differential equations. Open to upper-division undergraduate students and graduate students. Human Biology majors enroll in HUMBIO 154A.
Terms: Aut | Units: 4 | UG Reqs: WAY-AQR | Grading: Letter or Credit/No Credit
Instructors: Basu, S. (PI)

HUMBIO 154B: Principles of Epidemiology, with an emphasis on women's health

Epidemiology is the study of the distribution and determinants of health and disease in human populations. Utilizing the lens of women's health, this course will introduce students to the basic principles of epidemiological study design, analysis, and interpretation. The course will draw on critical topics in women's health for lectures, discussions, readings and assignments. Research articles from epidemiology as well as other social science disciplines will be utilized to offer students multiple perspectives on contemporary women's health issues. Human Biology 154 courses can be taken separately or as a series. Prerequisite: Human Biology core or equivalent or consent of instructor.
Terms: Aut | Units: 3 | UG Reqs: WAY-AQR | Grading: Letter (ABCD/NP)
Instructors: Kurina, L. (PI)

HUMBIO 154C: Cancer Epidemiology

Clinical epidemiological methods relevant to human research in cancer will be the focus. The concepts of risk; case control, cohort, and cross-sectional studies; clinical trials; bias; confounding; interaction; screening; and causal inference will be introduced and applied. Social, political, economic, and ethical controversies surrounding cancer screening, prevention, and research will be considered. Human Biology 154 courses can be taken separately or as a series. Prerequisite: Human Biology core or equivalent, or instructor consent.
Terms: Win | Units: 4 | UG Reqs: WAY-AQR | Grading: Letter or Credit/No Credit

MATH 114: Introduction to Scientific Computing (CME 108)

Introduction to Scientific Computing Numerical computation for mathematical, computational, physical sciences and engineering: error analysis, floating-point arithmetic, nonlinear equations, numerical solution of systems of algebraic equations, banded matrices, least squares, unconstrained optimization, polynomial interpolation, numerical differentiation and integration, numerical solution of ordinary differential equations, truncation error, numerical stability for time dependent problems and stiffness. Implementation of numerical methods in MATLAB programming assignments. Prerequisites: MATH 51, 52, 53; prior programming experience (MATLAB or other language at level of CS 106A or higher).
Terms: Win, Sum | Units: 3 | UG Reqs: GER:DB-EngrAppSci, WAY-AQR, WAY-FR | Grading: Letter or Credit/No Credit

MATSCI 190: Organic and Biological Materials (MATSCI 210)

Unique physical and chemical properties of organic materials and their uses. The relationship between structure and physical properties, and techniques to determine chemical structure and molecular ordering. Examples include liquid crystals, dendrimers, carbon nanotubes, hydrogels, and biopolymers such as lipids, protein, and DNA. Prerequisite: Thermodynamics and ENGR 50 or equivalent. Undergraduates register for 190 for 4 units; graduates register for 210 for 3 units.
Terms: Spr | Units: 3-4 | UG Reqs: GER:DB-EngrAppSci, WAY-AQR, WAY-SMA | Grading: Letter or Credit/No Credit

MS&E 120: Probabilistic Analysis

Concepts and tools for the analysis of problems under uncertainty, focusing on focusing on structuring, model building, and analysis. Examples from legal, social, medical, and physical problems. Topics include axioms of probability, probability trees, random variables, distributions, conditioning, expectation, change of variables, and limit theorems. Prerequisite: CME 100 or MATH 51.
Terms: Aut | Units: 5 | UG Reqs: GER:DB-EngrAppSci, WAY-AQR, WAY-FR | Grading: Letter or Credit/No Credit
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