ANTHRO 6:
Human Origins (ANTHRO 206, HUMBIO 6)
The human fossil record from the first non-human primates in the late Cretaceous or early Paleocene, 80-65 million years ago, to the anatomically modern people in the late Pleistocene, between 100,000 to 50,000 B.C.E. Emphasis is on broad evolutionary trends and the natural selective forces behind them.
| Units: 5
| UG Reqs: GER: DB-NatSci
ANTHRO 14:
Introduction to Anthropological Genetics
For upper division undergraduates. The extent and pattern of variation among human genomes, the origin of these patterns in human evolution, and the social and medical impact of recent discoveries. Topics include: the Human Genome Project; human origins; ancient DNA; genetic, behavioral, linguistic, cultural, and racial diversity; the role of disease in shaping genetic diversity; DNA forensics; genes and reproductive technology.
| Units: 3
| UG Reqs: GER: DB-NatSci
ANTHRO 171:
The Biology and Evolution of Language (ANTHRO 271, HUMBIO 145L)
Lecture course surveying the biology, linguistic functions, and evolution of the organs of speech and speech centers in the brain, language in animals and humans, the evolution of language itself, and the roles of innateness vs. culture in language. Suitable both for general education and as preparation for further studies in anthropology, biology, linguistics, medicine, psychology, and speech & language therapy. Anthropology concentration: CS, EE. No prerequisites.
Last offered: Winter 2014
| Units: 4-5
| UG Reqs: GER: DB-NatSci, WAY-SMA
ANTHRO 175:
Human Skeletal Anatomy (ANTHRO 275, BIO 174, BIO 274, HUMBIO 180)
Study of the human skeleton (a. k. a. human osteology), as it bears on other disciplines, including medicine, forensics, archaeology, and paleoanthropology (human evolution). Basic bone biology, anatomy, and development, emphasizing hands-on examination and identification of human skeletal parts, their implications for determining an individual¿s age, sex, geographic origin, and health status, and for the evolutionary history of our species. Three hours of lecture and at least three hours of supervised and independent study in the lab each week.
Terms: Win
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 3N:
Views of a Changing Sea: Literature & Science
The state of a changing world ocean, particularly in the eastern Pacific, will be examined through historical and contemporary fiction, non-fiction and scientific publications. Issues will include harvest and mariculture fisheries, land-sea interactions and oceanic climate change in both surface and deep waters.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 7S:
Introduction to Biology
The major fields of biology: biochemistry, the cell, evolution, and diversity. Foundation for higher-level biology courses.
Last offered: Summer 2014
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 9S:
Introduction to Biological Research Methods
Theory and practice of experimental biology. Introduction to how to plan an experiment, conduct, and analyze data. Introduction to scientific writing and reading scientific journal articles. Prerequisite: high school biology.
Last offered: Summer 2011
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 1:
Human Evolution and Environment
Human genetic and cultural evolution and how people interact with their environments, from the ancestors of Australopithecus to current events. Issues include race, gender, and intelligence; pesticide and antibiotic resistance; abortion and contraception; ecosystem services; environmental economics and ethics; the evolution of religion; climate change; population growth and overconsumption; origins and spread of ideas and technologies; and the distribution of political and economic power.
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 11N:
Biotechnology in Everyday Life
Preference to freshmen. The science that makes transgenic plants and animals possible. Current and future applications of biotechnology and the ethical issues raised.
Last offered: Autumn 2013
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 15N:
Environmental Literacy
Preference to freshmen. Lack of public understanding of the details of most environmental problems is cited as a cause of environmental deterioration. Good citizenship requires literacy about the elements of the scientific and decision making processes that accompany most environmental issues: what can happen, what are the odds, how can the credibility of sources of expertise be assessed, which components of environmental debates deal with factual and theoretical issues, and which are political value judgments?
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 25Q:
The Molecular Basis of Genetic Disease
Preference to sophomores. Focus is on two genetic diseases resulting from the production of protein molecules that are unable to fold into their native conformations, called conformational diseases: cystic fibrosis and amyotrophic lateral sclerosis or Lou Gehrig's disease. Hypotheses and controversies surrounding the molecular basis of these disorders, and implications for novel therapeutics. Readings from research literature.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 26N:
Maintenance of the Genome
Preference to freshmen. The precious blueprint for life is entrusted to the genomic DNA molecules in all living cells. Multiple strategies have evolved to prevent the deleterious consequences from endogenous DNA alterations and damage from radiation or genotoxic chemicals in the environment. In this seminar you will learn about the remarkable systems that scan cellular DNA for alterations and make repairs to ensure genomic stability. Deficiencies in DNA repair have been implicated in many hereditary diseases involving developmental defects, premature aging, and/or predisposition to cancer. An understanding of DNA repair mechanisms is important for advances in the fields of cancer biology, neurobiology, and gerontology. Background readings, introductory lectures, student presentations, short term paper.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 30:
Ecology for Everyone (EARTHSYS 30)
Everything is connected, but how? Ecology is the science of interactions and the changes they generate. This project-based course links individual behavior, population growth, species interactions, and ecosystem function. Introduction to measurement, observation, experimental design and hypothesis testing in field projects, mostly done in groups. The goal is to learn to think analytically about everyday ecological processes involving bacteria, fungi, plants, animals and humans. The course uses basic statistics to analyze data; there are no math prerequisites except arithmetic. Open to everyone, including those who may be headed for more advanced courses in ecology and environmental science.
Terms: Spr
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 30N:
Extinctions in Near Time: Biodiversity loss since the Pleistocene
The transition 11,700 years ago from the Pleistocene glacial period into the Holocene interglacial witnessed the expansion of humans around the world, climatic warming and the demise of many large vertebrate species. Since that time extinctions have continued on land and in the sea, culminating with the biodiversity crisis we are experiencing today. We will explore these prehistoric extinctions: "Who? When? Where? and Why?" in order to learn more about our planet's future.
Last offered: Autumn 2012
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-CE, WAY-SMA
BIO 33N:
Conservation Science and Practice
Preference to freshmen. Interdisciplinary. The science and art of conservation today. The forces that are driving change in Earth's atmosphere, lands, waters, and variety of life forms. Which broad dimensions of the biosphere, and which elements of ecosystems, most merit protection? The prospects for, and challenges in, making conservation economically attractive and commonplace. Field trip; project.
Last offered: Spring 2012
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 41:
Genetics, Biochemistry, and Molecular Biology
Emphasis is on macromolecules (proteins, lipids, carbohydrates, and nucleic acids) and how their structure relates to function and higher order assembly; molecular biology, genome structure and dynamics, gene expression from transcription to translation. Prerequisites: CHEM 31X (or 31A,B), 33. Recommended: CHEM 35; MATH 19, 20, 21 or 41, 42.
Terms: Aut
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 41S:
Biochemistry, Genetics, and Molecular Biology
Emphasis is on macromolecules (proteins, lipids, carbohydrates, and nucleic acids) and how their structure relates to function and higher order assembly; molecular biology, genome structure and dynamics, gene expression from transcription to translation. Prerequisites: CHEM 31X (or 31A,B), 33; MATH 19, 20, 21 or 41, 42. Recommended: CHEM 35.
Terms: Sum
| Units: 5
| UG Reqs: GER: DB-NatSci
BIO 42:
Cell Biology and Animal Physiology
Cell structure and function; principles of animal physiology (immunology, renal, cardiovascular, sensory, motor physiology, and endocrinology); neurobiology from cellular basis to neural regulation of physiology. Prerequisites: CHEM 31X (or 31A,B), 33. Recommended: BIO 41; CHEM 35; MATH 19, 20, 21 or 41, 42.
Terms: Win
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 43:
Plant Biology, Evolution, and Ecology
Principles of evolution: macro- and microevolution and population genetics. Ecology: the principles underlying the exchanges of mass and energy between organisms and their environments; population, community, and ecosystem ecology; populations, evolution, and global change. Equivalent to BIOHOPK 43. Prerequisites: CHEM 31X (or 31A,B), 33. Recommended: BIO 41, 42; CHEM 35; MATH 19, 20, 21 or 41, 42.
Terms: Spr
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 101:
Ecology
The principles of ecology. Topics: interactions of organisms with their environment, dynamics of populations, species interactions, structure and dynamics of ecological communities, biodiversity. Half-day field trip required. Satisfies Central Menu Area 4. Prerequisite: 43, or consent of instructor. Recommended: statistics.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci
BIO 104:
Advanced Molecular Biology (BIO 200)
Molecular mechanisms that govern the replication, recombination, and expression of eukaryotic genomes. Topics: DNA replication, DNA recombination, gene transcription, RNA splicing, regulation of gene expression, protein synthesis, and protein folding. Satisfies Central Menu Area 1. Prerequisite: Biology core.
Terms: Win
| Units: 5
| UG Reqs: GER: DB-NatSci
BIO 109A:
The Human Genome and Disease (BIOC 109A, BIOC 209A, HUMBIO 158)
The variability of the human genome and the role of genomic information in research, drug discovery, and human health. Concepts and interpretations of genomic markers in medical research and real life applications. Human genomes in diverse populations. Original contributions from thought leaders in academia and industry and interaction between students and guest lecturers. Students with a major, minor or coterm in Biology: 109A/209A or 109B/209B may count toward degree program but not both.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 109B:
The Human Genome and Disease: Genetic Diversity and Personalized Medicine (BIOC 109B, BIOC 209B)
Continuation of 109A/209A. Genetic drift: the path of human predecessors out of Africa to Europe and then either through Asia to Australia or through northern Russia to Alaska down to the W. Coast of the Americas. Support for this idea through the histocompatibility genes and genetic sequences that predispose people to diseases. Guest lectures from academia and pharmaceutical companies. Prerequisite: Biology or Human Biology core. Students with a major, minor or coterm in Biology: 109A/209A or 109B/209B may count toward degree program but not both.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 110:
DNA Replication and Genomic Maintenance (BIO 210)
Maintenance of the genome and its accurate replication are prerequisites for life. DNA replication is also intricately connected to pathways for responding to genotoxic stress, which include inevitable collisions with transcription. In eukaryotes, DNA repair and replication are tightly connected to chromatin modification. Emphasis for lecture topics include: DNA-templated chromatin transactions; Chromatin manipulation during replication and DNA damage responses; Structural biology and molecular mechanisms of replication and DNA repair enzymes; Inducible responses to genotoxic stress; Relationships of DNA damage processing to mutagenesis, carcinogenesis, aging and human genetic disease.
Last offered: Spring 2014
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 112:
Human Physiology (HUMBIO 133)
Human physiology will be examined by organ systems: respiratory, cardiovascular, renal, and gastrointestinal. Concepts of cell and molecular biology that underlie organ development, pathophysiology and opportunities for regenerative medicine will be introduced. Signaling and integrative control by the endocrine, autonomic and central nervous systems will be introduced. Prerequisite: Biology or Human Biology core.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci
BIO 113:
Fundamentals of Molecular Evolution (BIO 244)
The inference of key molecular evolutionary processes from DNA and protein sequences. Topics include random genetic drift, coalescent models, effects and tests of natural selection, combined effects of linkage and natural selection, codon bias and genome evolution. Satisfies Central Menu Areas 1 or 4. Prerequisites: Biology core or graduate standing in any department, and consent of instructor.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci
BIO 116:
Ecology of the Hawaiian Islands (EARTHSYS 116)
Terrestrial and marine ecology and conservation biology of the Hawaiian Archipelago. Taught in the field in Hawaii as part of quarter-long sequence of courses including Earth Sciences and Anthropology. Topics include ecological succession, plant-soil interactions, conservation biology, biological invasions and ecosystem consequences, and coral reef ecology. Restricted to students accepted into the Earth Systems of Hawaii Program.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci
BIO 117:
Biology and Global Change (EARTHSYS 111, EESS 111)
The biological causes and consequences of anthropogenic and natural changes in the atmosphere, oceans, and terrestrial and freshwater ecosystems. Topics: glacial cycles and marine circulation, greenhouse gases and climate change, tropical deforestation and species extinctions, and human population growth and resource use. Prerequisite: Biology or Human Biology core or graduate standing.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 118:
Genetic Analysis of Biological Processes
Focus is on using mutations and genetic analysis to study biological and medical questions. The first portion of the course covers how the identification and analysis of mutations can be used in model systems to investigate biological processes such as development and metabolism. In the second portion of the course, we focus on the use of existing genetic variation in humans and other species to identify disease-associated genes as well as to investigate variation in morphological traits such as body size and shape.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 121:
Biogeography
Global distributions of organisms through the Phanerozoic, with emphasis on historical causes. Topics: plate tectonics, island biogeography, climatic change, dispersal, vicariance, ecology of invasions, extinction, gradients, diversity. Satisfies Central Menu Area 4.
Last offered: Spring 2009
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 129A:
Cellular Dynamics I: Cell Motility and Adhesion
Cell motility emphasizing role of actin assembly and dynamics coupling actin organization to cell movement. Interaction of cells with extracellular matrix, and remodelling of extracellular matrix in development and disease. Directed cell migration by chemotaxis (neuronal path-finding, immune cells). Cell-cell adhesion, formation of intercellular junctions and mechanisms regulating cell-cell interactions in development and diseases. Emphasis is on experimental logic, methods, problem solving, and interpretation of results. Students present research papers. Satisfies Central Menu Area 2. Prerequisite: Biology core.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-AQR, WAY-SMA
BIO 129B:
Cellular Dynamics II: Building a Cell
Principles of cell organization; how common biochemical pathways are modified to generate diversity in cell structure and function. Roles of actin and microtubule cytoskeletons in cellular architecture. Mechanisms of protein sorting and trafficking, and protein modules and switches in regulating cell polarity. Yeast to polarized epithelial cells and neurons. Emphasis is on experimental logic, methods, problem solving, and interpretation of results. Students present research papers. Satisfies Central Menu Area 2. Prerequisite: Biology core. Recommended: 129A.
Terms: Spr
| Units: 4
| UG Reqs: GER: DB-NatSci
BIO 132:
Advanced Imaging Lab in Biophysics (APPPHYS 232, BIO 232, BIOPHYS 232, GENE 232)
Laboratory and lectures. Advanced microscopy and imaging, emphasizing hands-on experience with state-of-the-art techniques. Students construct and operate working apparatus. Topics include microscope optics, Koehler illumination, contrast-generating mechanisms (bright/dark field, fluorescence, phase contrast, differential interference contrast), and resolution limits. Laboratory topics vary by year, but include single-molecule fluorescence, fluorescence resonance energy transfer, confocal microscopy, two-photon microscopy, microendoscopy, and optical trapping. Limited enrollment. Recommended: basic physics, Biology core or equivalent, and consent of instructor.
Terms: Spr
| Units: 4
| UG Reqs: GER: DB-NatSci
BIO 136:
Evolutionary Paleobiology
A paleontological approach to evolutionary theory. Topics: history of life, speciation, heterochrony, evolutionary constraint, coevolution, macroevolution, the Cambrian Explosion, mass extinctions, taphonomy, life on land, life in the sea, life in the air. Satisfies Central Menu Area 4. Prerequisite: Biology Core.
Last offered: Winter 2011
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 137:
Plant Genetics
Gene analysis, mutagenesis, transposable elements; developmental genetics of flowering and embryo development; biochemical genetics of plant metabolism; scientific and societal lessons from transgenic plants. Satisfies Central Menu Area 2. Prerequisite: Biology core or consent of instructor. Satisfies WIM in Biology.
Last offered: Spring 2014
| Units: 3-4
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 139:
Biology of Birds
How birds interact with their environments and each other, emphasizing studies that had impact in the fields of population biology, community ecology, and evolution. Local bird communities. Emphasis is on field research. Enrollment limited to 20. Prerequisites: 43 or equivalent, and consent of instructor. Recommended: birding experience.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 13N:
Environmental Problems and Solutions
Preference to freshmen. Students do independent investigations of current environmental problems, analyzing differing views of them and discussing possible solutions. Each student gives seminar presentations and leads seminar discussions. Short, documented position papers are written for policy makers.
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 143:
Evolution
Principles of evolution. Adaptation and natural selection. Darwin and the history of evolutionary thought. Population genetics, including genetic variation and mutation, and effects of migration, drift, linkage, and recombination. Evolutionary phenomena: developmental evolution, life history evolution, molecular evolution, sexual selection, social evolution, and speciation. Pattern and process in biological diversity. Case studies, including human evolution. Satisfies central menu area 4, ecology & evolution.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 144:
Conservation Biology: A Latin American Perspective (BIO 234, HUMBIO 112)
Principles and application of the science of preserving biological diversity. Conceptually, this course is designed to explore 4 major components relevant to the conservation of biodiversity, as exemplified by the Latin American region. The conceptual frameworks and principles, however, should be generally applicable, and provide insights for all regions of the world, including those of lesser biodiversity. Satisfies Central Menu Area 4 for Bio majors. Prerequisite: BIO 101, or BIO 43 or HUMBIO 2A with consent of instructor. Graduate level students will be expected to conduct a literature research exercise leading to a written paper, addressing a topic of their choosing, derived from any of the themes discussed in class.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 145:
Ecology and evolution of animal behavior (BIO 245)
Ecological and evolutionary perspectives on animal behavior, with an emphasis on social and collective behavior. This is a project-based course in a lecture/seminar format. Seminars will be based on discussion of journal articles. Independent research projects on the behavior of animals on campus. Prerequisites: Biology or Human Biology core, Biology/ES 30. Recommended: statistics.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 149:
The Neurobiology of Sleep (BIO 249, HUMBIO 161)
Preference to seniors and graduate students. The neurochemistry and neurophysiology of changes in brain activity and conscious awareness associated with changes in the sleep/wake state. Behavioral and neurobiological phenomena including sleep regulation, sleep homeostasis, circadian rhythms, sleep disorders, sleep function, and the molecular biology of sleep. Enrollment limited to 16.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci
BIO 150:
Human Behavioral Biology (BIO 250, HUMBIO 160)
Multidisciplinary. How to approach complex normal and abnormal behaviors through biology. How to integrate disciplines including sociobiology, ethology, neuroscience, and endocrinology to examine behaviors such as aggression, sexual behavior, language use, and mental illness.
Last offered: Spring 2014
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 152:
Imaging: Biological Light Microscopy (MCP 222)
Survey of instruments which use light and other radiation for analysis of cells in biological and medical research. Topics: basic light microscopy through confocal fluorescence and video/digital image processing. Lectures on physical principles; involves partial assembly and extensive use of lab instruments. Lab. Prerequisites: some college physics, Biology core.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 153:
Cellular Neuroscience: Cell Signaling and Behavior (PSYCH 120)
Neural interactions underlying behavior. Prerequisites: PSYCH 1 or basic biology.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 154:
Molecular and Cellular Neurobiology
For advanced undergraduate students. Cellular and molecular mechanisms in the organization and functions of the nervous system. Topics: wiring of the neuronal circuit, synapse structure and synaptic transmission, signal transduction in the nervous system, sensory systems, molecular basis of behavior including learning and memory, molecular pathogenesis of neurological diseases. Satisfies Central Menu Areas 2 or 3 for Bio majors. Prerequisite for undergraduates: Biology core or equivalent, or consent of instructors.
Terms: Spr
| Units: 4
| UG Reqs: GER: DB-NatSci
BIO 158:
Developmental Neurobiology (BIO 258)
For advanced undergraduates and coterminal students. The principles of nervous system development from the molecular control of patterning, cell-cell interactions, and trophic factors to the level of neural systems and the role of experience in influencing brain structure and function. Topics: neural induction and patterning cell lineage, neurogenesis, neuronal migration, axonal pathfinding, synapse elimination, the role of activity, critical periods, and the development of behavior. Satisfies Central Menu Areas 2 or 3. Prerequisite: BIO 42 or equivalent.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 160A:
Developmental Biology I
Focus is on the molecular mechanisms underlying the generation of diverse cell types and tissues during embryonic and post-embryonic animal development. The role of cell-cell communication in controlling key developmental decisions. Topics covered in this quarter include embryonic axis formation, morphogen signaling, cell type specification and stem cells. Experimental logic and methods of research in developmental biology. Discussions of research papers. Satisfies Central Menu Areas 1 or 2. Prerequisite: Biology core or consent of instructor.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 160B:
Developmental Biology II
Continuation of BIO 160A. Focus is on the molecular mechanisms underlying the generation of diverse cell types and tissues during embryonic and post-embryonic animal development. The role of cell-cell communication in controlling key developmental decisions. The topics include sexual control of development, tissue polarity and growth, cell migration, regeneration, and the evolution of developmental mechanisms. Experimental logic and methods of research in developmental biology. Discussions of research papers. Satisfies Central Menu Areas 1 or 2. Prerequisites: Biology Core and 160A, or consent of instructor.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci
BIO 174:
Human Skeletal Anatomy (ANTHRO 175, ANTHRO 275, BIO 274, HUMBIO 180)
Study of the human skeleton (a. k. a. human osteology), as it bears on other disciplines, including medicine, forensics, archaeology, and paleoanthropology (human evolution). Basic bone biology, anatomy, and development, emphasizing hands-on examination and identification of human skeletal parts, their implications for determining an individual¿s age, sex, geographic origin, and health status, and for the evolutionary history of our species. Three hours of lecture and at least three hours of supervised and independent study in the lab each week.
Terms: Win
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIO 188:
Biochemistry I (BIO 288, CHEM 181, CHEMENG 181, CHEMENG 281)
Structure and function of major classes of biomolecules, including proteins, carbohydrates and lipids. Mechanistic analysis of properties of proteins including catalysis, signal transduction and membrane transport. Students will also learn to critically analyze data from the primary biochemical literature. Satisfies Central Menu Area 1 for Bio majors. (CHEMENG offerings formerly listed as 188/288.) Prerequisites: CHEM 33, 35, 131, and 135 or 171.
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 189:
Biochemistry II (BIO 289, CHEM 183, CHEMENG 183, CHEMENG 283)
Focus on metabolic biochemistry: the study of chemical reactions that provide the cell with the energy and raw materials necessary for life. Topics include glycolysis, gluconeogenesis, the citric acid cycle, oxidative phosphorylation, photosynthesis, the pentose phosphate pathway, and the metabolism of glycogen, fatty acids, amino acids, and nucleotides as well as the macromolecular machines that synthesize RNA, DNA, and proteins. Medical relevance is emphasized throughout. Satisfies Central Menu Area 1 for Bio majors. Prerequisite: BIO 188/288 or CHEM 181 or CHEMENG 181/281 (formerly 188/288).
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 20:
Introduction to Brain and Behavior (HUMBIO 21)
Evolutionary principles to understand how the brain regulates behavior physiologically, and is also influenced by behavioral interactions. Topics include neuron structure and function, transmission of neural information, anatomy and physiology of sensory and motor systems, regulation of body states, the biological basis of learning and memory, and behavioral abnormalities.
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 22Q:
Infection, Immunity, and Global Health
Why do infectious diseases continue to challenge us despite advances in medicine? This course will explore the causes and prevention of infectious diseases, focusing on the interplay between pathogens, the immune system, the environment, and societal factors that affect disease occurrence and outcomes. Topics will include: basic elements of microbiology, immunology, and epidemiology; case studies of old diseases (e.g., smallpox, tuberculosis, malaria) and recently-emergent diseases (e.g., Ebola, AIDS, antibiotic-resistant bacteria, Lyme disease, and pandemic influenza) that illustrate the biological, environmental, cultural, political, and economic factors that affect disease emergence, spread, and control; the limitations of modern medical approaches such as antibiotics and vaccines; and strategies for reducing global infectious disease threats. The seminar will feature class discussion, student projects, and faculty and student presentations. Prerequisite: biology background, preferably introductory college courses (e.g., 41, 42, or HUMBIO 2A, 3A).
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 23N:
FACEBUG: The Social Life of Microbes
Exploration of three crucial aspects of microbial life. First, examine how the unseen microbial majority is responsible for critical but under-appreciated aspects of the biology of the planet. Second, investigate the array of current genomic and imaging tools available to probe microscopic organisms in the environment. Last, we will research the importance of microbial communities and social dynamics in ecological and human health settings.
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 34N:
Hunger
The biology of hunger and satiety, disease states that disrupt normal responses to hunger and satiety, starvation responses and adaptations to starvation in a variety of organisms, food production and distribution mechanisms, historic famines and their causes, the challenges of providing adequate food and energy for the Earth's growing population, local and global efforts to alleviate hunger, and hunger in fiction.
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 37N:
Green Revolution and Plant Biotechnology
Feeding ever-growing populations is a constant challenge to mankind. In the second half of the 20th century, the breeding of improved varieties combined with the use of chemical fertilizers and pesticides led to crop yield increases labeled the Green Revolution. Modern technologies in genetic engineering are expected to bring the second green revolution. Meeting the current and future global food needs without further damaging the fragile environment requires innovative effort from scientists and the society.
| Units: 2-3
| UG Reqs: GER: DB-NatSci
BIO 151:
Mechanisms of Neuron Death
For Biology majors with background in neuroscience. Cell and molecular biology of neuron death during neurological disease. Topics: the amyloid diseases (Alzheimer's), prion diseases (kuru and Creutzfeldt-Jakob), oxygen radical diseases (Parkinson's and ALS), triplet repeat diseases (Huntington's), and AIDS-related dementia. Student presentations. Enrollment limited to 15; application required.
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 157:
Biochemistry and Molecular Biology of Plants (BIO 257)
Biochemical and molecular basis of plant growth and adaptation. Topics include: hormone signal transduction; photoreceptor chemistry and signaling; metabolite sensing and transport; dynamics of photosynthesis; plant innate immunity and symbiosis. Lectures and readings will emphasize research methods. Prerequisite: Biology core or equivalent, or consent of instructor.
| Units: 3-4
| UG Reqs: GER: DB-NatSci
BIO 163:
Neural Systems and Behavior (BIO 263, HUMBIO 163)
The field of neuroethology and its vertebrate and invertebrate model systems. Research-oriented. Readings include reviews and original papers. How animal brains compare; how neural circuits are adapted to species-typical behavior; and how the sensory worlds of different species represent the world. Lectures and required discussions. Satisfies Central Menu Area 3 for Bio majors. Prerequisites: BIO 42, HUMBIO 4A.
| Units: 4
| UG Reqs: GER: DB-NatSci
BIO 164:
Biosphere-Atmosphere Interactions (BIO 264)
Physiological, ecological, and physical aspects of ecosystem function, emphasizing how ecosystems influence and are influenced by the atmosphere. Prerequisites: 42, 43; or consent of instructor.
| Units: 4
| UG Reqs: GER: DB-NatSci
BIO 171:
Principles of Cell Cycle Control (BIO 271, CSB 271)
Genetic analysis of the key regulatory circuits governing the control of cell division. Illustration of key principles that can be generalized to other synthetic and natural biological circuits. Focus on tractable model organisms; growth control; irreversible biochemical switches; chromosome duplication; mitosis; DNA damage checkpoints; MAPK pathway-cell cycle interface; oncogenesis. Analysis of classic and current primary literature. Satisfies Central Menu Area 2.
| Units: 3
| UG Reqs: GER: DB-NatSci
BIO 271:
Principles of Cell Cycle Control (BIO 171, CSB 271)
Genetic analysis of the key regulatory circuits governing the control of cell division. Illustration of key principles that can be generalized to other synthetic and natural biological circuits. Focus on tractable model organisms; growth control; irreversible biochemical switches; chromosome duplication; mitosis; DNA damage checkpoints; MAPK pathway-cell cycle interface; oncogenesis. Analysis of classic and current primary literature. Satisfies Central Menu Area 2.
| Units: 3
| UG Reqs: GER: DB-NatSci
BIOC 109A:
The Human Genome and Disease (BIO 109A, BIOC 209A, HUMBIO 158)
The variability of the human genome and the role of genomic information in research, drug discovery, and human health. Concepts and interpretations of genomic markers in medical research and real life applications. Human genomes in diverse populations. Original contributions from thought leaders in academia and industry and interaction between students and guest lecturers. Students with a major, minor or coterm in Biology: 109A/209A or 109B/209B may count toward degree program but not both.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIOC 109B:
The Human Genome and Disease: Genetic Diversity and Personalized Medicine (BIO 109B, BIOC 209B)
Continuation of 109A/209A. Genetic drift: the path of human predecessors out of Africa to Europe and then either through Asia to Australia or through northern Russia to Alaska down to the W. Coast of the Americas. Support for this idea through the histocompatibility genes and genetic sequences that predispose people to diseases. Guest lectures from academia and pharmaceutical companies. Prerequisite: Biology or Human Biology core. Students with a major, minor or coterm in Biology: 109A/209A or 109B/209B may count toward degree program but not both.
Last offered: Spring 2014
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIOC 118Q:
Genomics and Medicine
Preference to sophomores. Knowledge gained from sequencing human genomes and implications for medicine and biomedical research. Novel diagnoses and treatment of diseases, including stem cells, gene therapy and rational drug design. Personal genomics and how it is used to improve health and well being. Social and ethical implications of genetic information such as privacy, discrimination and insurability. Course Webpage: http://biochem118.stanford.edu/.
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIOC 158:
Genomics, Bioinformatics and Medicine (BIOC 258, BIOMEDIN 258, HUMBIO 158G)
Molecular basis of inherited human disease. Diagnostics approaches: simple Mendelian diseases and complex, multifactorial diseases. Genomics: functional genomics, epigenetics, gene expression, SNPs, copy number and other structural genomic variations involved in disease. Novel therapeutic methods: stem cell therapy, gene therapy and drug developments that depend on the knowledge of genomics. Personal genomics, pharmacogenomics, clinical genomics and their role in the future of preventive medicine. Prerequisites: BIO 41 or HUMBIO 2A or consent of instructor. Those with credit in BIOC 118 not eligible to enroll. Course webpage: http://biochem158.stanford.edu/
Terms: Aut, Win, Spr
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
| Repeatable
2 times
(up to 6 units total)
BIOE 122:
Biosecurity and Bioterrorism Response (PUBLPOL 122, SURG 122)
Overview of the most pressing biosecurity issues facing the world today. Guest lecturers have included former Secretary of State Condoleezza Rice, former Special Assistant on BioSecurity to Presidents Clinton and Bush Jr. Dr. Ken Bernard, Chief Medical Officer of the Homeland Security Department Dr. Alex Garza, eminent scientists, innovators and physicians in the field, and leaders of relevant technology companies. How well the US and global healthcare systems are prepared to withstand a pandemic or a bioterrorism attack, how the medical/healthcare field, government, and the technology sectors are involved in biosecurity and pandemic or bioterrorism response and how they interface, the rise of synthetic biology with its promises and threats, global bio-surveillance, making the medical diagnosis, isolation, containment, hospital surge capacity, stockpiling and distribution of countermeasures, food and agriculture biosecurity, new promising technologies for detection of bio-threats and countermeasures. Open to medical, graduate, and undergraduate students. No prior background in biology necessary. This course satisfies the TiS requirement for Engineering students; please check with your major advisor to verify this. 4 units for twice weekly attendance (Mon. and Wed.); additional 1 unit for writing a research paper for 5 units total maximum. PLEASE NOTE: This class will meet for the first time on Wednesday, April 1.
Terms: Spr
| Units: 4-5
| UG Reqs: GER: DB-NatSci, GER:EC-GlobalCom
BIOHOPK 43:
Plant Biology, Evolution, and Ecology
Introduction to biology in a marine context. Principles of plant biology: physiology, structure, diversity. Principles of evolution: macro and microevolution, population genetics. Ecology: the principles governing the distribution and abundance of organisms; population, community, and ecosystem ecology. Equivalent to BIO 43. Corequisite: BIOHOPK 44Y.
Terms: Spr
| Units: 5
| UG Reqs: GER: DB-NatSci
BIOHOPK 44Y:
Core Laboratory in Plant Biology, Ecology and Evolution
Laboratory and field projects provide working familiarity with the concepts, organisms, and techniques of plant and evolutionary biology, and ecology. Emphasis is on hands-on experimentation in the marine environment, analysis of data, and written and oral presentation of the experiments. Equivalent to BIO 44Y. Corequisite: BIOHOPK 43. Satisfies WIM in Biology.
Terms: Spr
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIOHOPK 161H:
Invertebrate Zoology (BIOHOPK 261H)
(Graduate students register for 261H.) Survey of invertebrate diversity emphasizing form and function in a phylogenetic framework. Morphological diversity, life histories, physiology, and ecology of the major invertebrate groups, concentrating on local marine forms as examples. Current views on the phylogenetic relationships and evolution of the invertebrates. Lectures, lab, plus field trips. Satisfies Central Menu Area 3 for Bio majors. Prerequisite: Biology core or consent of instructor.
Last offered: Winter 2014
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIOHOPK 162H:
Comparative Animal Physiology (BIOHOPK 262H)
(Graduate students register for 262H.) How animals work. Topics: physiology of respiration, circulation, energy metabolism, thermal regulation, osmotic regulation, muscle physiology, and locomotion. Evolutionary and ecological physiology. Lectures, lab, and field research. An option to combine the course work with a more intensive research focus, with more units, is available. Satisfies Central Menu Area 3 for Bio majors. Prerequisite: Biology core or consent of instructor.
Last offered: Spring 2012
| Units: 5
| UG Reqs: GER: DB-NatSci
BIOHOPK 163H:
Oceanic Biology (BIOHOPK 263H)
(Graduate students register for 263H.) How the physics and chemistry of the oceanic environment affect marine plants and animals. Topics: seawater and ocean circulation, separation of light and nutrients in the two-layered ocean, oceanic food webs and trophic interactions, oceanic environments, biogeography, and global change. Lectures, discussion, and field trips. Satisfies Central Menu Area 4 for Bio majors. Recommended: PHYSICS 21 or 51, CHEM 31, Biology core, or consent of instructor.
Last offered: Winter 2014
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIOHOPK 167H:
Nerve, Muscle, and Synapse (BIOHOPK 267H)
(Graduate students register for 267H.) Fundamental aspects of membrane excitability, nerve conduction, synaptic transmission, and excitation-contraction coupling. Emphasis is on biophysical, molecular, and cellular level analyses of these processes in vertebrate and invertebrate systems. Labs on intra- and extracellular recording and patch clamp techniques. Lectures, discussions, and labs. Satisfies Central Menu Area 3 for Bio majors Prerequisites: PHYSICS 23, 28, 43, or equivalent; CHEM 31, 135; calculus; or consent of instructor.
Terms: Spr
| Units: 5
| UG Reqs: GER: DB-NatSci
BIOHOPK 172H:
Marine Ecology: From Organisms to Ecosystems (BIOHOPK 272H)
(Graduate students register for 272H.) This course incorporates the approaches of experimental ecology, biomechanics (ecomechanics), and physiology to develop an integrated perspective on the factors that govern the structures of marine ecosystems and how environment change, including anthropogenic influences, affects ecosystems' species composition and health. Focus is on rocky intertidal, kelp forest, estuarine, and midwater ecosystems of Monterey Bay. Experimental projects done in the field offer experience in a variety of ecological techniques and in analysis of ecological data. Students will engage in presentation and debates of current topics in marine ecology and conservation. Satisfies Central Menu Area 4 for Bio majors. Prerequisite: Biology core or consent of instructor. Fulfills WIM in Biology.
Terms: Win
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIOHOPK 174H:
Experimental Design and Probability (BIOHOPK 274H)
(Graduate students register for 274H.) Variability is an integral part of biology. Introduction to probability and its use in designing experiments to address biological problems. Focus is on analysis of variance, when and how to use it, why it works, and how to interpret the results. Design of complex, but practical, asymmetrical experiments and environmental impact studies, and regression and analysis of covariance. Computer-based data analysis. Prerequisite: Biology core or consent of instructor.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci, GER:DB-Math, WAY-AQR, WAY-FR
BIOHOPK 182H:
Stanford at Sea (BIOHOPK 323H, EARTHSYS 323, EESS 323)
(Graduate students register for 323H.) Five weeks of marine science including oceanography, marine physiology, policy, maritime studies, conservation, and nautical science at Hopkins Marine Station, followed by five weeks at sea aboard a sailing research vessel in the Pacific Ocean. Shore component comprised of three multidisciplinary courses meeting daily and continuing aboard ship. Students develop an independent research project plan while ashore, and carry out the research at sea. In collaboration with the Sea Education Association of Woods Hole, MA. Only 6 units may count towards the Biology major.
Terms: Spr
| Units: 16
| UG Reqs: GER: DB-NatSci, WAY-SMA
BIOHOPK 166H:
Molecular Ecology (BIOHOPK 266H)
(Graduate students register for 266H.) How modern technologies in gene sequencing, detection of nuclear nucleotide polymorphisms, and other approaches are used to gather data on genetic variation that allow measurement of population structure, infer demographic histories, inform conservation efforts, and advance understanding of the ecology of diverse types of organisms.
| Units: 5
| UG Reqs: GER: DB-NatSci
BIOHOPK 184H:
Holistic Biology (BIOHOPK 284H)
(Graduate students register for 284H.) For majors and non-majors. Complexity in natural systems is examined from complementary points of view, including scientific, historical, philosophical and literary. Lectures and discussions will focus on the writings of Ed Ricketts and John Steinbeck, poetry of Robinson Jeffers and on historical and contemporary works concerning marine and fresh-water systems, resource management and climate change. A group project with individual contributions will be carried out and presented at a symposium. This course will involve a significant amount of creative writing, and it satisfies the Writing in Major requirement for Biology. It is open to all majors and classes. Only 6 units may count towards the Biology major.
| Units: 16
| UG Reqs: GER: DB-NatSci
CEE 63:
Weather and Storms (CEE 263C)
Daily and severe weather and global climate. Topics: structure and composition of the atmosphere, fog and cloud formation, rainfall, local winds, wind energy, global circulation, jet streams, high and low pressure systems, inversions, el Niño, la Niña, atmosphere/ocean interactions, fronts, cyclones, thunderstorms, lightning, tornadoes, hurricanes, pollutant transport, global climate and atmospheric optics.
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
CEE 64:
Air Pollution and Global Warming: History, Science, and Solutions (CEE 263D)
Survey of Survey of air pollution and global warming and their renewable energy solutions. Topics: evolution of the Earth's atmosphere, history of discovery of chemicals in the air, bases and particles in urban smog, visibility, indoor air pollution, acid rain, stratospheric and Antarctic ozone loss, the historic climate record, causes and effects of global warming, impacts of energy systems on pollution and climate, renewable energy solutions to air pollution and global warming. UG Reqs: GER: DBNatSci
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
CEE 164:
Introduction to Physical Oceanography (CEE 262D, EARTHSYS 164, EESS 148)
The dynamic basis of oceanography. Topics: physical environment; conservation equations for salt, heat, and momentum; geostrophic flows; wind-driven flows; the Gulf Stream; equatorial dynamics and ENSO; thermohaline circulation of the deep oceans; and tides. Prerequisite: PHYSICS 41 (formerly 53).
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci
CEE 196:
Engineering Geology and Global Change (GES 115)
The application of geology and global change to the planning, design, and operation of engineering projects. Case histories taught in a seminar setting and field trips emphasize the impact of geology and global change on both individual engineering works and the built environment by considering Quaternary history and tectonics, anthropogenic sea level rise, active geologic processes, engineering properties of geologic deposits, site exploration, and professional ethics. Prerequisite: GES 1 or consent of instructor.
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 26N:
The What, Why, How and wow's of Nanotechnology
Preference to freshmen. Introduction to nanotechnology with discussion of basic science at the nanoscale, its difference from molecular and macroscopic scales, and implications and applications. Developments in nanotechnology in the past two decades, from imaging and moving single atoms on surfaces to killing cancer cells with nanoscale tools and gadgets.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 31A:
Chemical Principles I
For students with moderate or no background in chemistry. Stoichiometry; periodicity; electronic structure and bonding; gases; enthalpy; phase behavior. Emphasis is on skills to address structural and quantitative chemical questions; lab provides practice. Recitation.
Terms: Aut, Sum
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
CHEM 31B:
Chemical Principles II
Chemical equilibrium; acids and bases; oxidation and reduction reactions; chemical thermodynamics; kinetics. Lab. Prerequisite: 31A.
Terms: Win, Sum
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
CHEM 31X:
Chemical Principles Accelerated
Accelerated; for students with substantial chemistry background. Chemical equilibria concepts, equilibrium constants, acids and bases, chemical thermodynamics, quantum concepts, models of ionic and covalent bonding, atomic and molecular orbital theory, periodicity, and bonding properties of matter. Recitation. Prerequisites: AP chemistry score of 5 or passing score on chemistry placement test, and AP Calculus AB score of 4 or Math 41. Recommended: high school physics.
Terms: Aut
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
CHEM 33:
Structure and Reactivity
Organic chemistry, functional groups, hydrocarbons, stereochemistry, thermochemistry, kinetics, chemical equilibria. Recitation. Prerequisite: 31A,B, or 31X, or an AP Chemistry score of 5.
Terms: Win, Spr
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
CHEM 35:
Synthetic and Physical Organic Chemistry
The structure and reactivity of mono- and polyfunctionalized molecules; retrosynthetic analysis and multi-step chemical synthesis. Course will emphasize deductive logic and reasoning skills through conceptual learning. Students gain an appreciation for the profound impact of organic chemistry on humankind in fields ranging from biology and medicine to gastronomy, agriculture, and materials science. A three hour lab section provides hands on experience with modern chemical methods for preparative and analytical chemistry. Prerequisite: Chem 33
Terms: Aut, Spr
| Units: 5
| UG Reqs: GER: DB-NatSci
CHEM 36:
Organic Chemistry Laboratory I
Techniques for separations of compounds: distillation, crystallization, extraction, and chromatographic procedures. Lecture treats theory; lab provides practice. Prerequisite: CHEM 35
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 130:
Organic Chemistry Laboratory
Diels-Alder, reduction, and Wittig reactions; qualitative analysis. Lab. Limited enrollment Autumn Quarter. Prerequisite: Chem 35 taken in Aut 2014-15 or later, or Chem 35 and 36. Corequisite: 131.
Terms: Aut, Win
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 131:
Organic Polyfunctional Compounds
Aromatic compounds, polysaccharides, amino acids, proteins, natural products, dyes, purines, pyrimidines, nucleic acids, and polymers. Prerequisite: 35.
Terms: Aut, Win
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 132:
Synthesis Laboratory
Advanced synthetic methods in organic and inorganic laboratory chemistry. Prerequisites: 35, 130.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 134:
Analytical Chemistry Laboratory
Methods include gravimetric, volumetric, spectrophotometric, and chromatographic. Writing instruction includes communications, full papers, research proposals, and referee papers. Lab. Prerequisite: 130.
Terms: Spr
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-AQR, WAY-SMA
CHEM 135:
Physical Chemical Principles
Introductory physical chemistry intended for students of the life sciences, geology and environmental engineering. Chemical kinetics: rate laws, integration of rate laws, reaction mechanisms, enzyme kinetics. Chemical thermodynamics: first, second and third laws, thermochemistry, entropy, free energy, chemical equilibrium, physical equilibrium, osmotic pressure, other colligative properties. Prerequisites: 31A,B, or 31X, calculus.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 137:
Special Topics in Synthesis
The course covers the basic toolbox for construction of more complex structures for function, largely directed towards molecules of biological relevance. The focus will be the ability to perform structural changes efficiently in order to enable the design of the best structure for a function. The concepts of catalytic processes are at the heart of the how small molecule drug discovery is performed. Fundamentals of the pertinent catalytic processes are discussed. The inter-relationship of synthetic chemistry and pharmaceuticals is emphasized. See more at: http://library.stanford.edu/guides/chem-137-special-topics-organic-chemistry#sthash.vi9khNU5.dpuf. Prerequisite CHEM 35.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 151:
Inorganic Chemistry I
Theories of electronic structure, stereochemistry, and symmetry properties of inorganic molecules. Topics: ionic and covalent interactions, electron-deficient bonding, and molecular orbital theories. Emphasis is on the chemistry of the metallic elements. Prerequisites: 35. Recommended: 171.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 153:
Inorganic Chemistry II
The theoretical aspects of inorganic chemistry. Group theory; many-electron atomic theory; molecular orbital theory emphasizing general concepts and group theory; ligand field theory; application of physical methods to predict the geometry, magnetism, and electronic spectra of transition metal complexes. Prerequisites: 151, 173.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 171:
Physical Chemistry I
Chemical thermodynamics and kinetic molecular models; fundamental principles, Gibbsian equations, systematic deduction of equations, equilibrium conditions, gases, phase changes, solutions and chemical equilibrium. Introduction to chemical kinetics: roles of thermal motion and energy barriers, relationship between rate and reaction mechanism, and modeling of specific reactions. The MATLAB programming language will be used for modeling, analysis and visualization throughout. Optional discussion section. Prerequisites: 31A,B, or 31X; 33; PHYS 41; either CME 100 or MATH 51 and (MATH 51M or CME 192 or CS 106A).
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 173:
Physical Chemistry II
Introduction to quantum chemistry: the basic principles of wave mechanics, the harmonic oscillator, the rigid rotator, infrared and microwave spectroscopy, the hydrogen atom, atomic structure, molecular structure, valence theory. Prerequisites: CHEM 171; CME 102, 104 or MATH 53; PHYSICS 41, 43.
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 174:
Electrochemical Measurements Lab (CHEM 274)
This course provides an introduction to modern electrochemical measurement in a hands-on, laboratory setting. Students assemble and use electrochemical cells including indicator, reference, working and counter electrodes, with macro, micro and ultramicro geometries, salt bridges, ion-selective membranes, electrometers, potentiostats, galvanostats, and stationary and rotated disk electrodes. The later portion of the course will involve a student-generated project to experimentally characterize some electrochemical system. Prerequisites: 134, 171, MATH 51, PHYSICS 44 or equivalent.
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 175:
Physical Chemistry III
Molecular theory of kinetics and statistical mechanics: transport and reactions in gases and liquids, ensembles and the Boltzmann distribution law, partition functions, molecular simulation, structure and dynamics of liquids. Diffusion and activation limited reactions ¿ potential energy surfaces, collision theory and transition-state theory of reaction rates. Prerequisites: 171, 173.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 176:
Spectroscopy Laboratory
Use of spectroscopic instrumentation to study molecular properties and physical chemical time-dependent processes. Experiments include electronic ultraviolet/visible absorption, fluorescence, Raman, infrared vibrational and nuclear magnetic resonance spectroscopies. Prerequisite: 173.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 181:
Biochemistry I (BIO 188, BIO 288, CHEMENG 181, CHEMENG 281)
Structure and function of major classes of biomolecules, including proteins, carbohydrates and lipids. Mechanistic analysis of properties of proteins including catalysis, signal transduction and membrane transport. Students will also learn to critically analyze data from the primary biochemical literature. Satisfies Central Menu Area 1 for Bio majors. (CHEMENG offerings formerly listed as 188/288.) Prerequisites: CHEM 33, 35, 131, and 135 or 171.
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 183:
Biochemistry II (BIO 189, BIO 289, CHEMENG 183, CHEMENG 283)
Focus on metabolic biochemistry: the study of chemical reactions that provide the cell with the energy and raw materials necessary for life. Topics include glycolysis, gluconeogenesis, the citric acid cycle, oxidative phosphorylation, photosynthesis, the pentose phosphate pathway, and the metabolism of glycogen, fatty acids, amino acids, and nucleotides as well as the macromolecular machines that synthesize RNA, DNA, and proteins. Medical relevance is emphasized throughout. Satisfies Central Menu Area 1 for Bio majors. Prerequisite: BIO 188/288 or CHEM 181 or CHEMENG 181/281 (formerly 188/288).
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEM 184:
Biological Chemistry Laboratory
Modern techniques in biological chemistry including protein purification, characterization of enzyme kinetics, heterologous expression of His-tagged fluorescent proteins, site-directed mutagenesis, and single-molecule fluorescence microscopy. Prerequisite: 181.
Terms: Spr
| Units: 4
| UG Reqs: GER: DB-NatSci
CHEM 185:
Biochemistry III
Advanced biophysical chemistry. Topics include: protein and DNA structure, stability, and folding, membrane lateral organization and dynamics, and transmembrane transport. Prerequisites: 171, 173, 183.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEMENG 181:
Biochemistry I (BIO 188, BIO 288, CHEM 181, CHEMENG 281)
Structure and function of major classes of biomolecules, including proteins, carbohydrates and lipids. Mechanistic analysis of properties of proteins including catalysis, signal transduction and membrane transport. Students will also learn to critically analyze data from the primary biochemical literature. Satisfies Central Menu Area 1 for Bio majors. (CHEMENG offerings formerly listed as 188/288.) Prerequisites: CHEM 33, 35, 131, and 135 or 171.
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci
CHEMENG 183:
Biochemistry II (BIO 189, BIO 289, CHEM 183, CHEMENG 283)
Focus on metabolic biochemistry: the study of chemical reactions that provide the cell with the energy and raw materials necessary for life. Topics include glycolysis, gluconeogenesis, the citric acid cycle, oxidative phosphorylation, photosynthesis, the pentose phosphate pathway, and the metabolism of glycogen, fatty acids, amino acids, and nucleotides as well as the macromolecular machines that synthesize RNA, DNA, and proteins. Medical relevance is emphasized throughout. Satisfies Central Menu Area 1 for Bio majors. Prerequisite: BIO 188/288 or CHEM 181 or CHEMENG 181/281 (formerly 188/288).
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci
COMPMED 81N:
Comparative Anatomy and Physiology of Mammals
Preference to freshmen. Emphasis is on a comparative approach to anatomy and physiology of a wide range of mammals, the unique adaptations of each species in terms of its anatomical, and behavioral characteristics, and how these species interact with human beings and other animals. Dissection required. Class size is limited to 16.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
COMPMED 87Q:
Introduction to the Mouse in Biomedical Research
Preference to sophomores. Focus is on the laboratory mouse, a widely used and important research model. Topics include the ethics of animal use in research; the natural history, origin and husbandry of the mouse; characteristics of key mouse strains; its anatomy and physiology; common diseases and their effects on research; coat color genetics relative to human diseases; immunodeficient mouse models; and genetic engineering of mice. The laboratory includes necropsy, handling, anesthesia, identification methods, and common research techniques using live and dead mice. Enrollment limited to 14 students.
Last offered: Autumn 2013
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
EARTHSYS 4:
Evolution and Extinction: Introduction to Historical Geology (GES 4)
Introduction to the history of the Earth, with a focus on processes that maintain or threaten habitability. Principles of stratigraphy, correlation, the geological timescale, the history of biodiversity, and the interpretation of fossils. The use of data from sedimentary geology, geochemistry, and paleontology to test theories for critical events in Earth history such as mass extinctions. One half-day field trip.
Terms: Spr
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
EARTHSYS 8:
The Oceans: An Introduction to the Marine Environment
For non-majors and majors in earth science or environmental science. The major ocean ecosystems and how they function both naturally and under the influence of human activities. Emphasis is on the dominant organisms of each ecosystem and how they interact with each other and their physical and chemical environment. The types of ecosystems discussed include coral reefs, deep-sea hydrothermal vents, coastal upwelling systems, blue-water oceans, estuaries, and near-shore dead zones. Lectures, multimedia presentations, and group activities.
Last offered: Spring 2013
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
EARTHSYS 10:
Introduction to Earth Systems
For non-majors and prospective Earth Systems majors. Multidisciplinary approach using the principles of geology, biology, engineering, and economics to describe how the Earth operates as an interconnected, integrated system. Goal is to understand global change on all time scales. Focus is on sciences, technological principles, and sociopolitical approaches applied to solid earth, oceans, water, energy, and food and population. Case studies: environmental degradation, loss of biodiversity, and resource sustainability.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
EARTHSYS 30:
Ecology for Everyone (BIO 30)
Everything is connected, but how? Ecology is the science of interactions and the changes they generate. This project-based course links individual behavior, population growth, species interactions, and ecosystem function. Introduction to measurement, observation, experimental design and hypothesis testing in field projects, mostly done in groups. The goal is to learn to think analytically about everyday ecological processes involving bacteria, fungi, plants, animals and humans. The course uses basic statistics to analyze data; there are no math prerequisites except arithmetic. Open to everyone, including those who may be headed for more advanced courses in ecology and environmental science.
Terms: Spr
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
EARTHSYS 38N:
The Worst Journey in the World: The Science, Literature, and History of Polar Exploration (EESS 38N, GES 38N)
This course examines the motivations and experiences of polar explorers under the harshest conditions on Earth, as well as the chronicles of their explorations and hardships, dating to the 1500s for the Arctic and the 1700s for the Antarctic. Materials include The Worst Journey in the World by Aspley Cherry-Garrard who in 1911 participated in a midwinter Antarctic sledging trip to recover emperor penguin eggs. Optional field trip into the high Sierra in March.
Last offered: Winter 2014
| Units: 3
| UG Reqs: GER: DB-NatSci
EARTHSYS 56Q:
Changes in the Coastal Ocean: The View From Monterey and San Francisco Bays (EESS 56Q)
Preference to sophomores. Recent changes in the California current, using Monterey Bay as an example. Current literature introduces principles of oceanography. Visits from researchers from MBARI, Hopkins, and UCSC. Optional field trip to MBARI and Monterey Bay.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci
EARTHSYS 104:
The Water Course (GEOPHYS 104)
The pathway that water takes from rainfall to the tap using student home towns as an example. How the geological environment controls the quantity and quality of water; taste tests of water from around the world. Current U.S. and world water supply issues.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-AQR, WAY-SMA
EARTHSYS 111:
Biology and Global Change (BIO 117, EESS 111)
The biological causes and consequences of anthropogenic and natural changes in the atmosphere, oceans, and terrestrial and freshwater ecosystems. Topics: glacial cycles and marine circulation, greenhouse gases and climate change, tropical deforestation and species extinctions, and human population growth and resource use. Prerequisite: Biology or Human Biology core or graduate standing.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
EARTHSYS 116:
Ecology of the Hawaiian Islands (BIO 116)
Terrestrial and marine ecology and conservation biology of the Hawaiian Archipelago. Taught in the field in Hawaii as part of quarter-long sequence of courses including Earth Sciences and Anthropology. Topics include ecological succession, plant-soil interactions, conservation biology, biological invasions and ecosystem consequences, and coral reef ecology. Restricted to students accepted into the Earth Systems of Hawaii Program.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci
EARTHSYS 122:
Paleobiology (GES 123)
Introduction to the fossil record with emphasis on marine invertebrates. Major debates in paleontological research. The history of animal life in the oceans. Topics include the nature of the fossil record, evolutionary radiations, mass extinctions, and the relationship between biological evolution and environmental change. Fossil taxa through time. Exercises in phylogenetics, paleoecology, biostratigraphy, and statistical methods.
Last offered: Spring 2013
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
EARTHSYS 141:
Remote Sensing of the Oceans (EARTHSYS 241, EESS 141, EESS 241, GEOPHYS 141)
How to observe and interpret physical and biological changes in the oceans using satellite technologies. Topics: principles of satellite remote sensing, classes of satellite remote sensors, converting radiometric data into biological and physical quantities, sensor calibration and validation, interpreting large-scale oceanographic features.
Terms: Win
| Units: 3-4
| UG Reqs: GER: DB-NatSci, WAY-AQR
EARTHSYS 144:
Fundamentals of Geographic Information Science (GIS) (EESS 164)
Survey of geographic information including maps, satellite imagery, and census data, approaches to spatial data, and tools for integrating and examining spatially-explicit data. Emphasis is on fundamental concepts of geographic information science and associated technologies. Topics include geographic data structure, cartography, remotely sensed data, statistical analysis of geographic data, spatial analysis, map design, and geographic information system software. Computer lab assignments.
Terms: Aut
| Units: 3-4
| UG Reqs: GER: DB-NatSci
EARTHSYS 155:
Science of Soils (EESS 155)
Physical, chemical, and biological processes within soil systems. Emphasis is on factors governing nutrient availability, plant growth and production, land-resource management, and pollution within soils. How to classify soils and assess nutrient cycling and contaminant fate. Recommended: introductory chemistry and biology.
Terms: Spr
| Units: 3-4
| UG Reqs: GER: DB-NatSci, WAY-SMA
EARTHSYS 156:
Soil and Water Chemistry (EARTHSYS 256, EESS 156, EESS 256)
(Graduate students register for 256.) Practical and quantitative treatment of soil processes affecting chemical reactivity, transformation, retention, and bioavailability. Principles of primary areas of soil chemistry: inorganic and organic soil components, complex equilibria in soil solutions, and adsorption phenomena at the solid-water interface. Processes and remediation of acid, saline, and wetland soils. Recommended: soil science and introductory chemistry and microbiology.
Last offered: Winter 2014
| Units: 1-4
| UG Reqs: GER: DB-NatSci, WAY-SMA
EARTHSYS 164:
Introduction to Physical Oceanography (CEE 164, CEE 262D, EESS 148)
The dynamic basis of oceanography. Topics: physical environment; conservation equations for salt, heat, and momentum; geostrophic flows; wind-driven flows; the Gulf Stream; equatorial dynamics and ENSO; thermohaline circulation of the deep oceans; and tides. Prerequisite: PHYSICS 41 (formerly 53).
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci
EARTHSYS 170:
Environmental Geochemistry (GES 170, GES 270)
Solid, aqueous, and gaseous phases comprising the environment, their natural compositional variations, and chemical interactions. Contrast between natural sources of hazardous elements and compounds and types and sources of anthropogenic contaminants and pollutants. Chemical and physical processes of weathering and soil formation. Chemical factors that affect the stability of solids and aqueous species under earth surface conditions. The release, mobility, and fate of contaminants in natural waters and the roles that water and dissolved substances play in the physical behavior of rocks and soils. The impact of contaminants and design of remediation strategies. Case studies. Prerequisite: 90 or consent of instructor.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci
EARTHSYS 37N:
Climate Change: Science & Society
Preference to freshmen. How and why do greenhouse gases cause climate to change? How will a changing climate affect humans and natural ecosystems? What can be done to prevent climate change and better adapt to the climate change that does occur? Focus is on developing quantitative understanding of these issues rooted in both the physical and social sciences. Exercises based on simple quantitative observations and calculations; algebra only, no calculus.
| Units: 3
| UG Reqs: GER: DB-NatSci
EARTHSYS 39N:
The Carbon Cycle: Reducing Your Impact
Preference to freshmen. Changes in the long- and short-term carbon cycle and global climate through the burning of fossil fuels since the Industrial Revolution. How people can shrink their carbon footprints. Long-term sources and sinks of carbon and how they are controlled by tectonics and short-term sources and sinks and the interaction between the biosphere and ocean. How people can shrink their carbon footprints. Held at the Stanford Community Farm.
| Units: 3
| UG Reqs: GER: DB-NatSci
ECON 155:
Environmental Economics and Policy
Economic sources of environmental problems and alternative policies for dealing with them (technology standards, emissions taxes, and marketable pollution permits). Evaluation of policies addressing regional air pollution, global climate change, water allocation in the western U.S., and the use of renewable resources. Connections between population growth, economic output, environmental quality, and human welfare. Prerequisite: ECON 50.
Terms: Win
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SI
EE 65:
Modern Physics for Engineers
This course introduces the core ideas of modern physics that enable applications ranging from solar energy and efficient lighting to the modern electronic and optical devices and nanotechnologies that sense, process, store, communicate and display all our information. Though the ideas have broad impact, the course is widely accessible to engineering and science students with only basic linear algebra and calculus through simple ordinary differential equations as mathematics background. Topics include the quantum mechanics of electrons and photons (Schrödinger's equation, atoms, electrons, energy levels and energy bands; absorption and emission of photons; quantum confinement in nanostructures), the statistical mechanics of particles (entropy, the Boltzmann factor, thermal distributions), the thermodynamics of light (thermal radiation, limits to light concentration, spontaneous and stimulated emission), and the physics of information (Maxwell¿s demon, reversibility, entropy and noise in physics and information theory). Pre-requisite: Physics 41. Pre- or co-requisite: Math 53 or CME 102.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci, GER:DB-EngrAppSci, WAY-SMA
EESS 38N:
The Worst Journey in the World: The Science, Literature, and History of Polar Exploration (EARTHSYS 38N, GES 38N)
This course examines the motivations and experiences of polar explorers under the harshest conditions on Earth, as well as the chronicles of their explorations and hardships, dating to the 1500s for the Arctic and the 1700s for the Antarctic. Materials include The Worst Journey in the World by Aspley Cherry-Garrard who in 1911 participated in a midwinter Antarctic sledging trip to recover emperor penguin eggs. Optional field trip into the high Sierra in March.
Last offered: Winter 2014
| Units: 3
| UG Reqs: GER: DB-NatSci
EESS 56Q:
Changes in the Coastal Ocean: The View From Monterey and San Francisco Bays (EARTHSYS 56Q)
Preference to sophomores. Recent changes in the California current, using Monterey Bay as an example. Current literature introduces principles of oceanography. Visits from researchers from MBARI, Hopkins, and UCSC. Optional field trip to MBARI and Monterey Bay.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci
EESS 111:
Biology and Global Change (BIO 117, EARTHSYS 111)
The biological causes and consequences of anthropogenic and natural changes in the atmosphere, oceans, and terrestrial and freshwater ecosystems. Topics: glacial cycles and marine circulation, greenhouse gases and climate change, tropical deforestation and species extinctions, and human population growth and resource use. Prerequisite: Biology or Human Biology core or graduate standing.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
EESS 141:
Remote Sensing of the Oceans (EARTHSYS 141, EARTHSYS 241, EESS 241, GEOPHYS 141)
How to observe and interpret physical and biological changes in the oceans using satellite technologies. Topics: principles of satellite remote sensing, classes of satellite remote sensors, converting radiometric data into biological and physical quantities, sensor calibration and validation, interpreting large-scale oceanographic features.
Terms: Win
| Units: 3-4
| UG Reqs: GER: DB-NatSci, WAY-AQR
EESS 148:
Introduction to Physical Oceanography (CEE 164, CEE 262D, EARTHSYS 164)
The dynamic basis of oceanography. Topics: physical environment; conservation equations for salt, heat, and momentum; geostrophic flows; wind-driven flows; the Gulf Stream; equatorial dynamics and ENSO; thermohaline circulation of the deep oceans; and tides. Prerequisite: PHYSICS 41 (formerly 53).
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci
EESS 155:
Science of Soils (EARTHSYS 155)
Physical, chemical, and biological processes within soil systems. Emphasis is on factors governing nutrient availability, plant growth and production, land-resource management, and pollution within soils. How to classify soils and assess nutrient cycling and contaminant fate. Recommended: introductory chemistry and biology.
Terms: Spr
| Units: 3-4
| UG Reqs: GER: DB-NatSci, WAY-SMA
EESS 156:
Soil and Water Chemistry (EARTHSYS 156, EARTHSYS 256, EESS 256)
(Graduate students register for 256.) Practical and quantitative treatment of soil processes affecting chemical reactivity, transformation, retention, and bioavailability. Principles of primary areas of soil chemistry: inorganic and organic soil components, complex equilibria in soil solutions, and adsorption phenomena at the solid-water interface. Processes and remediation of acid, saline, and wetland soils. Recommended: soil science and introductory chemistry and microbiology.
Last offered: Winter 2014
| Units: 1-4
| UG Reqs: GER: DB-NatSci, WAY-SMA
EESS 164:
Fundamentals of Geographic Information Science (GIS) (EARTHSYS 144)
Survey of geographic information including maps, satellite imagery, and census data, approaches to spatial data, and tools for integrating and examining spatially-explicit data. Emphasis is on fundamental concepts of geographic information science and associated technologies. Topics include geographic data structure, cartography, remotely sensed data, statistical analysis of geographic data, spatial analysis, map design, and geographic information system software. Computer lab assignments.
Terms: Aut
| Units: 3-4
| UG Reqs: GER: DB-NatSci
EESS 241:
Remote Sensing of the Oceans (EARTHSYS 141, EARTHSYS 241, EESS 141, GEOPHYS 141)
How to observe and interpret physical and biological changes in the oceans using satellite technologies. Topics: principles of satellite remote sensing, classes of satellite remote sensors, converting radiometric data into biological and physical quantities, sensor calibration and validation, interpreting large-scale oceanographic features.
Terms: Win
| Units: 3-4
| UG Reqs: GER: DB-NatSci, WAY-AQR
ENGR 31:
Chemical Principles with Application to Nanoscale Science and Technology
Preparation for engineering disciplines emphasizing modern technological applications of solid state chemistry. Topics include: crystallography; chemical kinetics and equilibria; thermodynamics of phase changes and reaction; quantum mechanics of chemical bonding, molecular orbital theory, and electronic band structure of crystals; and the materials science of basic electronic and photonic devices. Prerequisite: AP 4 or 5 Chemistry, or equivalent, or successful completion of CHEM 31x placement test, or college chemistry background in stoichiometry, periodicity, Lewis and VSEPR structures, dissolution/precipitation and acid/base reactions, gas laws, and phase behavior.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
GEOPHYS 20N:
Predicting Volcanic Eruptions
Preference to sophomores. The physics and chemistry of volcanic processes and modern methods of volcano monitoring. Volcanoes as manifestations of the Earth's internal energy and hazards to society. How earth scientists better forecast eruptive activity by monitoring seismic activity, bulging of the ground surface, and the discharge of volcanic gases, and by studying deposits from past eruptions. Focus is on the interface between scientists and policy makers and the challenges of decision making with incomplete information. Field trip to Mt. St. Helens, site of the 1980 eruption.
Last offered: Spring 2014
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-AQR, WAY-SMA
GEOPHYS 50N:
Planetary Habitability, World View, and Sustainability
Sustainability lessons from the geological past Life on Earth has partially perished in sudden mass extinctions several time over the Earth's history. Threats include actions of our own volition, including fossil fuel burning as well as natural events, including the impact of large asteroids. The end Permian 250 million years ago and end Paleocene 55 million years ago extinctions involved natural burning of fossil fuels. The 65 million year ago end Cretaceous extinction involved the impact of and asteroid and possibly fossil fuel burning. Related sustainability topics in the popular press will be discussed as they arise. Student pairs lead discussions on topics on how humanity might avert these catastrophes. Offered occasionally.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci
GEOPHYS 104:
The Water Course (EARTHSYS 104)
The pathway that water takes from rainfall to the tap using student home towns as an example. How the geological environment controls the quantity and quality of water; taste tests of water from around the world. Current U.S. and world water supply issues.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-AQR, WAY-SMA
GEOPHYS 110:
Earth on the Edge: Introduction to Geophysics
Introduction to the foundations of contemporary geophysics. Topics drawn from four broad themes in: whole Earth geodynamics, geohazards, natural resources, and environment/sustainability. In each case the focus is on how the interpretation of a variety of geophysical measurements (e.g., gravity, seismology, heat flow, magnetism, electromagnetics, and geodesy) can be used to provide fundamental insight into the behavior of the Earth's complex geosystems. Prerequisite: CME 100 or MA TH 51, or co-registration in either.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-AQR, WAY-SMA
GEOPHYS 120:
Ice, Water, Fire (GEOPHYS 220)
Introductory application of continuum mechanics to ice sheets and glaciers, water waves and tsunamis, and volcanoes. Emphasis on physical processes and mathematical description using balance of mass and momentum, combined with constitutive equations for fluids and solids. Designed for undergraduates with no prior geophysics background; also appropriate for beginning graduate students. Prerequisites: CME 100 or MATH 52 and PHYSICS 41 (or equivalent). Offered every year, winter quarter.
Terms: Win
| Units: 3-5
| UG Reqs: GER: DB-NatSci, WAY-FR, WAY-SMA
GEOPHYS 130:
Introductory Seismology
Introduction to seismology including: elasticity and the wave equation, P, S, and surface waves, dispersion, ray theory, reflection and transmission of seismic waves, seismic imaging, large-scale Earth structure, earthquake location, earthquake statistics and forecasting, magnitude scales, seismic source theory. Offered every year, Autumn quarter. (Beroza, G)
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-AQR, WAY-SMA
GEOPHYS 141:
Remote Sensing of the Oceans (EARTHSYS 141, EARTHSYS 241, EESS 141, EESS 241)
How to observe and interpret physical and biological changes in the oceans using satellite technologies. Topics: principles of satellite remote sensing, classes of satellite remote sensors, converting radiometric data into biological and physical quantities, sensor calibration and validation, interpreting large-scale oceanographic features.
Terms: Win
| Units: 3-4
| UG Reqs: GER: DB-NatSci, WAY-AQR
GEOPHYS 150:
Geodynamics: Our Dynamic Earth
In this course we cover the dynamic forces acting upon the Earth. We will investigate how geophysical forces effect the bending of tectonic plates, the flow of heat, sea level topography, the breaking point of rocks, porous flow, and how faults store and release energy. Math 52 or CME 102, GP 107 or permission from instructor. Offered every year, Spring quarter
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
GEOPHYS 182:
Reflection Seismology (GEOPHYS 222)
The principles of seismic reflection profiling, focusing on methods of seismic data acquisition and seismic data processing for hydrocarbon exploration.
| Units: 3
| UG Reqs: GER: DB-NatSci
GES 1A:
Introduction to Geology: The Physical Science of the Earth
For non-majors or prospective majors in the Earth Sciences. Lectures, hands-on laboratories, and three one-day weekend field trips. Focus is on the physical and chemical processes of heat and mass transfer within the earth and its fluid envelopes, including deep-earth, crustal, surface, and atmospheric processes. Topics include the dynamics of and interactions between the inner earth, plate tectonics, surface processes, and atmospheric processes such as climate change and global warming. Only one of GES 1A, 1B, or 1C may be taken for credit. Prerequisites: MATH 19 or equivalent.
Terms: Spr
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-AQR, WAY-SMA
GES 1B:
Introduction to Geology
For non-majors and prospective majors or minors in the Earth Sciences. Introduction to physical geology. Lectures and lab exercises focus on understanding the dynamics of Earth¿s ongoing physical and chemical processes. Major themes include plate tectonics, the rock cycle, the hydrologic cycle, and mineral resources. We will employ local CA geology, current events, and the state-of-the-art to drive discussions on landscapes, hazards, and economics. Only one of GES 1A, 1B, or 1C may be taken for credit. Recommended: high school chemistry.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-FR, WAY-SMA
GES 1C:
Introduction to Geology: Dynamic Earth
For non-majors or prospective majors in the Earth Sciences. Integrated lecture-lab includes hands-on activities and local field trips. Focus is on reading the dynamic geological landscape, with an emphasis on California-primarily Bay Area-geology. Topics include plate tectonics, earthquakes and volcanoes, Earth materials, geologic time, stream processes, and climate change over geologic time. Only one of GES 1A, 1B, or 1C may be taken for credit.
Last offered: Spring 2013
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
GES 4:
Evolution and Extinction: Introduction to Historical Geology (EARTHSYS 4)
Introduction to the history of the Earth, with a focus on processes that maintain or threaten habitability. Principles of stratigraphy, correlation, the geological timescale, the history of biodiversity, and the interpretation of fossils. The use of data from sedimentary geology, geochemistry, and paleontology to test theories for critical events in Earth history such as mass extinctions. One half-day field trip.
Terms: Spr
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
GES 8:
Oceanography: An Introduction to the Marine Environment
For non-majors and earth science and environmental majors. Topics: topography and geology of the sea floor; evolution of ocean basins; circulation of ocean and atmosphere; nature of sea water, waves, and tides; and the history of the major ocean basins. The interface between continents and ocean basins, emphasizing estuaries, beaches, and continental shelves with California margin examples. Relationships among the distribution of inorganic constituents, ocean circulation, biologic productivity, and marine environments from deep sea to the coast. One-day field trip to measure and analyze waves and currents.
Last offered: Summer 2014
| Units: 3
| UG Reqs: GER: DB-NatSci
GES 38N:
The Worst Journey in the World: The Science, Literature, and History of Polar Exploration (EARTHSYS 38N, EESS 38N)
This course examines the motivations and experiences of polar explorers under the harshest conditions on Earth, as well as the chronicles of their explorations and hardships, dating to the 1500s for the Arctic and the 1700s for the Antarctic. Materials include The Worst Journey in the World by Aspley Cherry-Garrard who in 1911 participated in a midwinter Antarctic sledging trip to recover emperor penguin eggs. Optional field trip into the high Sierra in March.
Last offered: Winter 2014
| Units: 3
| UG Reqs: GER: DB-NatSci
GES 39N:
Forensic Geoscience: Stanford CSI
Preference to freshmen. Geological principles, materials, and techniques indispensable to modern criminal investigations. Basic earth materials, their origin and variability, and how they can be used as evidence in criminal cases and investigations such as artifact provenance and environmental pollution. Sources include case-based, simulated forensic exercises and the local environments of the Stanford campus and greater Bay Area. Local field trips; research presentation and paper.
Last offered: Spring 2014
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-AQR, WAY-SMA
GES 40N:
Diamonds
Preference to freshmen. Topics include the history of diamonds as gemstones, prospecting and mining, and their often tragic politics. How diamond samples provide clues for geologists to understand the Earth's deep interior and the origins of the solar system. Diamond's unique materials properties and efforts in synthesizing diamonds.
Last offered: Spring 2011
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
GES 43Q:
Environmental Problems
Preference to sophomores. Components of multidisciplinary environmental problems and ethical questions associated with decision making in the regulatory arena. Students lead discussions on environmental issues such as groundwater contamination from point and nonpoint sources, cumulative watershed effects related to timber and mining practices, acid rain, and subsurface disposal of nuclear waste.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci
GES 50Q:
The Coastal Zone Environment
Preference to sophomores. The oceanographic, geological, and biological character of coastal zone environments, including continental shelves, estuaries, and coastal wetlands, with emphasis on San Francisco Bay. Five required field trips examine estuarine and coastal environments, and agencies and facilities that manage these resources. Students present original research. Prerequisite: beginning course in Biology such as BIOSCI 51, Chemistry such as CHEM 30 or 31, Earth Sciences such as GES 1 or 2, or Earth Systems such as EARTHSYS 10.
| Units: 3
| UG Reqs: GER: DB-NatSci
GES 55Q:
The California Gold Rush: Geologic Background and Environmental Impact
Preference to sophomores. Topics include: geologic processes that led to the concentration of gold in the river gravels and rocks of the Mother Lode region of California; and environmental impact of the Gold Rush due to population increase, mining operations, and high concentrations of arsenic and mercury in sediments from hard rock mining and milling operations. Recommended: introductory geology.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA, Writing 2
GES 90:
Introduction to Geochemistry
The chemistry of the solid earth and its atmosphere and oceans, emphasizing the processes that control the distribution of the elements in the earth over geological time and at present, and on the conceptual and analytical tools needed to explore these questions. The basics of geochemical thermodynamics and isotope geochemistry. The formation of the elements, crust, atmosphere and oceans, global geochemical cycles, and the interaction of geochemistry, biological evolution, and climate. Recommended: introductory chemistry.
Terms: Win
| Units: 3-4
| UG Reqs: GER: DB-NatSci, WAY-SMA
GES 102:
Earth Materials: Introduction to Mineralogy
The minerals and materials that comprise the earth and their uses in modern society. How to identify, classify, and interpret rock-forming minerals. Emphasis is on information provided by common minerals about the nature of the Earth's interior and processes such as magmatism and metamorphism that operate there, as well as the major processes of weathering and erosion that link plate tectonics to earth cycles. Required lab section. Prerequisite: introductory geology course. Recommended: introductory chemistry.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
GES 110:
Structural Geology and Tectonics
Theory, principles, and practical techniques to measure, describe, analyze, and interpret deformation-related structures on Earth. Collection of fault and fold data in the field followed by lab and computer analysis; interpretation of geologic maps and methods of cross-section construction; structural analysis of fault zone and metamorphic rocks; measuring deformation; regional structural styles and associated landforms related to plate tectonic convergence, rifting, and strike-slip faulting; the evolution of mountain belts and formation of sedimentary basins. Prerequisite: GES 1, calculus. Recommended: 102.
Terms: Spr
| Units: 3-5
| UG Reqs: GER: DB-NatSci
GES 123:
Paleobiology (EARTHSYS 122)
Introduction to the fossil record with emphasis on marine invertebrates. Major debates in paleontological research. The history of animal life in the oceans. Topics include the nature of the fossil record, evolutionary radiations, mass extinctions, and the relationship between biological evolution and environmental change. Fossil taxa through time. Exercises in phylogenetics, paleoecology, biostratigraphy, and statistical methods.
Last offered: Spring 2013
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
GES 130:
Soil Physics and Hydrology
The occurrence, distribution, circulation, and reaction of water at the surface and within the near surface. Topics: precipitation, evapotranspiration, infiltration and vadose zone, groundwater, surface water and streamflow generation, and water balance estimates. Current and classic theory in soil physics and hydrology. Urban, rangeland, and forested environments.
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
GES 131:
Hydrologically-Driven Landscape Evolution
Materials of the Earth and hydrologically driven landscape processes. Topics: hillslope hydrology, weathering of rocks and soils, erosion, flow failures, mass wasting, and conceptual models of landscape evolution. Current and classic theory in geomorphology.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
GES 151:
Sedimentary Geology and Petrography: Depositional Systems
Topics: weathering, erosion and transportation, deposition, origins of sedimentary structures and textures, sediment composition, diagenesis, sedimentary facies, tectonics and sedimentation, and the characteristics of the major siliciclastic and carbonate depositional environments. Lab: methods of analysis of sediments in hand specimen and thin section. Field trips. Prerequisites: 1, 102, 103.
Terms: Spr
| Units: 4
| UG Reqs: GER: DB-NatSci
GES 170:
Environmental Geochemistry (EARTHSYS 170, GES 270)
Solid, aqueous, and gaseous phases comprising the environment, their natural compositional variations, and chemical interactions. Contrast between natural sources of hazardous elements and compounds and types and sources of anthropogenic contaminants and pollutants. Chemical and physical processes of weathering and soil formation. Chemical factors that affect the stability of solids and aqueous species under earth surface conditions. The release, mobility, and fate of contaminants in natural waters and the roles that water and dissolved substances play in the physical behavior of rocks and soils. The impact of contaminants and design of remediation strategies. Case studies. Prerequisite: 90 or consent of instructor.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci
GES 171:
Geochemical Thermodynamics
Introduction to the application of chemical principles and concepts to geologic systems. The chemical behavior of fluids, minerals, and gases using simple equilibrium approaches to modeling the geochemical consequences of diagenetic, hydrothermal, metamorphic, and igneous processes. Topics: reversible thermodynamics, solution chemistry, mineral-solution equilibria, reaction kinetics, and the distribution and transport of elements by geologic processes. Prerequisite: GES 102.
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci
GES 185:
Volcanology
For juniors, seniors, and beginning graduate students in earth sciences. Eruptive processes that create volcanic deposits and landforms; relation to physical properties of magmas. Volcanic hazards and the effects of eruptions on climate; volcanic-hosted geothermal systems and mineral resources. Required 4-day field trip over Memorial Day weekend to study silicic and mafic volcanism in the eastern Sierra Nevada. Those taking the class for 4 units will complete a 3-hour weekly lab involving hand specimen and thin section identification and interpretation, which emphasizes recognizing types of lavas and products of explosive eruptions. Prerequisite: 1, for those taking the course for 3 units; 103 and 104 or equivalent for those taking the course for 4 units.
Terms: Spr
| Units: 3-4
| UG Reqs: GER: DB-NatSci
GES 115:
Engineering Geology and Global Change (CEE 196)
The application of geology and global change to the planning, design, and operation of engineering projects. Case histories taught in a seminar setting and field trips emphasize the impact of geology and global change on both individual engineering works and the built environment by considering Quaternary history and tectonics, anthropogenic sea level rise, active geologic processes, engineering properties of geologic deposits, site exploration, and professional ethics. Prerequisite: GES 1 or consent of instructor.
| Units: 3
| UG Reqs: GER: DB-NatSci
GES 181:
Metamorphic Processes
For juniors, seniors, and beginning graduate students in Earth Sciences. Thermodynamics and phase equilibria of multiple component systems; use of phase equilibria to determine pressure and temperature of metamorphic assemblages; geochronology of metamorphic rocks; heat flow in the lithosphere; links between tectonics and metamorphism; and the role of heat and mass transfer in the Earth's crust and mantle. Labs emphasize identification of metamorphic rocks and minerals for common pelitic and basic rocks and interpretation of rock textures. May be taken for 3 units without lab. Prerequisites: 102, 103, or consent of instructor.
| Units: 3-5
| UG Reqs: GER: DB-NatSci
HUMBIO 2A:
Genetics, Evolution, and Ecology
Introduction to the principles of classical and modern genetics, evolutionary theory, and population biology. Topics: micro- and macro-evolution, population and molecular genetics, biodiversity, and ecology, emphasizing the genetics and ecology of the evolutionary process and applications to human populations. HUMBIO 2A and 2B must be taken concurrently.
Terms: Aut
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
HUMBIO 3A:
Cell and Developmental Biology
The principles of the biology of cells: principles of human developmental biology, biochemistry of energetics and metabolism, the nature of membranes and organelles, hormone action and signal transduction in normal and diseased states (diabetes, cancer, autoimmune diseases), drug discovery, immunology, and drug addiction. HUMBIO 3A and 3B must be taken concurrently. Prerequisite: college chemistry or completion of the HumBio chemistry lecture series during the fall quarter.
Terms: Win
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
HUMBIO 4A:
The Human Organism
Organ system physiology: the principles of neurobiology and endocrinology, and the functions of body organs. The mechanisms of control, regulation, and integration of organ systems function. HUMBIO 4A and 4B must be taken concurrently.
Terms: Spr
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
HUMBIO 6:
Human Origins (ANTHRO 6, ANTHRO 206)
The human fossil record from the first non-human primates in the late Cretaceous or early Paleocene, 80-65 million years ago, to the anatomically modern people in the late Pleistocene, between 100,000 to 50,000 B.C.E. Emphasis is on broad evolutionary trends and the natural selective forces behind them.
| Units: 5
| UG Reqs: GER: DB-NatSci
HUMBIO 91Q:
Neuroethology: The Neural Control of Behavior
Preference to sophomores. Animal behavior offers insights about evolutionary adaptations and this seminar will discuss the origins of the study of animal behavior and its development to the present. How does the nervous system control behavior and how is it changed by behavior? We will analyze and discuss original research papers about the neural basis of behavior. The use and misuse of parallels between animal and human behavior. Possible field trip to observe animals in their natural habitat.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
HUMBIO 112:
Conservation Biology: A Latin American Perspective (BIO 144, BIO 234)
Principles and application of the science of preserving biological diversity. Conceptually, this course is designed to explore 4 major components relevant to the conservation of biodiversity, as exemplified by the Latin American region. The conceptual frameworks and principles, however, should be generally applicable, and provide insights for all regions of the world, including those of lesser biodiversity. Satisfies Central Menu Area 4 for Bio majors. Prerequisite: BIO 101, or BIO 43 or HUMBIO 2A with consent of instructor. Graduate level students will be expected to conduct a literature research exercise leading to a written paper, addressing a topic of their choosing, derived from any of the themes discussed in class.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci
HUMBIO 133:
Human Physiology (BIO 112)
Human physiology will be examined by organ systems: respiratory, cardiovascular, renal, and gastrointestinal. Concepts of cell and molecular biology that underlie organ development, pathophysiology and opportunities for regenerative medicine will be introduced. Signaling and integrative control by the endocrine, autonomic and central nervous systems will be introduced. Prerequisite: Biology or Human Biology core.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci
HUMBIO 145L:
The Biology and Evolution of Language (ANTHRO 171, ANTHRO 271)
Lecture course surveying the biology, linguistic functions, and evolution of the organs of speech and speech centers in the brain, language in animals and humans, the evolution of language itself, and the roles of innateness vs. culture in language. Suitable both for general education and as preparation for further studies in anthropology, biology, linguistics, medicine, psychology, and speech & language therapy. Anthropology concentration: CS, EE. No prerequisites.
Last offered: Winter 2014
| Units: 4-5
| UG Reqs: GER: DB-NatSci, WAY-SMA
HUMBIO 158:
The Human Genome and Disease (BIO 109A, BIOC 109A, BIOC 209A)
The variability of the human genome and the role of genomic information in research, drug discovery, and human health. Concepts and interpretations of genomic markers in medical research and real life applications. Human genomes in diverse populations. Original contributions from thought leaders in academia and industry and interaction between students and guest lecturers. Students with a major, minor or coterm in Biology: 109A/209A or 109B/209B may count toward degree program but not both.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
HUMBIO 158G:
Genomics, Bioinformatics and Medicine (BIOC 158, BIOC 258, BIOMEDIN 258)
Molecular basis of inherited human disease. Diagnostics approaches: simple Mendelian diseases and complex, multifactorial diseases. Genomics: functional genomics, epigenetics, gene expression, SNPs, copy number and other structural genomic variations involved in disease. Novel therapeutic methods: stem cell therapy, gene therapy and drug developments that depend on the knowledge of genomics. Personal genomics, pharmacogenomics, clinical genomics and their role in the future of preventive medicine. Prerequisites: BIO 41 or HUMBIO 2A or consent of instructor. Those with credit in BIOC 118 not eligible to enroll. Course webpage: http://biochem158.stanford.edu/
Terms: Aut, Win, Spr
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
| Repeatable
2 times
(up to 6 units total)
HUMBIO 160:
Human Behavioral Biology (BIO 150, BIO 250)
Multidisciplinary. How to approach complex normal and abnormal behaviors through biology. How to integrate disciplines including sociobiology, ethology, neuroscience, and endocrinology to examine behaviors such as aggression, sexual behavior, language use, and mental illness.
Last offered: Spring 2014
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
HUMBIO 161:
The Neurobiology of Sleep (BIO 149, BIO 249)
Preference to seniors and graduate students. The neurochemistry and neurophysiology of changes in brain activity and conscious awareness associated with changes in the sleep/wake state. Behavioral and neurobiological phenomena including sleep regulation, sleep homeostasis, circadian rhythms, sleep disorders, sleep function, and the molecular biology of sleep. Enrollment limited to 16.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci
HUMBIO 167:
The Art of Vision
This course concerns eyes and art. It asks how eyes are built, how they process visual information, and how they are affected by diseases that are major problems in our society. These topics are illustrated through fine art and famous artists, and we explore the implications of both normal and abnormal vision for art. There are short diversions into animal eyes and the role of vision in music, literature, and sports.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-A-II
HUMBIO 180:
Human Skeletal Anatomy (ANTHRO 175, ANTHRO 275, BIO 174, BIO 274)
Study of the human skeleton (a. k. a. human osteology), as it bears on other disciplines, including medicine, forensics, archaeology, and paleoanthropology (human evolution). Basic bone biology, anatomy, and development, emphasizing hands-on examination and identification of human skeletal parts, their implications for determining an individual¿s age, sex, geographic origin, and health status, and for the evolutionary history of our species. Three hours of lecture and at least three hours of supervised and independent study in the lab each week.
Terms: Win
| Units: 5
| UG Reqs: GER: DB-NatSci, WAY-SMA
HUMBIO 186:
Biological Clocks
The biological basis for endogenous timekeeping in organisms from flies to human beings. How biological clocks are constructed at the molecular, tissue, and behavioral levels; how these clocks interact with other physiological systems and allow animals to anticipate changes in their environment. Applications of circadian rhythm principles to treating human disorders and diseases such as cancer. Prerequisite: Biology or Human Biology core, or consent of instructor.
| Units: 3
| UG Reqs: GER: DB-NatSci
HUMBIO 21:
Introduction to Brain and Behavior (BIO 20)
Evolutionary principles to understand how the brain regulates behavior physiologically, and is also influenced by behavioral interactions. Topics include neuron structure and function, transmission of neural information, anatomy and physiology of sensory and motor systems, regulation of body states, the biological basis of learning and memory, and behavioral abnormalities.
| Units: 3
| UG Reqs: GER: DB-NatSci
HUMBIO 163:
Neural Systems and Behavior (BIO 163, BIO 263)
The field of neuroethology and its vertebrate and invertebrate model systems. Research-oriented. Readings include reviews and original papers. How animal brains compare; how neural circuits are adapted to species-typical behavior; and how the sensory worlds of different species represent the world. Lectures and required discussions. Satisfies Central Menu Area 3 for Bio majors. Prerequisites: BIO 42, HUMBIO 4A.
| Units: 4
| UG Reqs: GER: DB-NatSci
OSPFLOR 52:
Mass Extinctions and the Geology of Italy
Understanding of Earth processes and Earth history as a basis for informed citizen decisions regarding public policies and private actions. How the Earth works; perspective on modern global change through detailed examination of comparable events in Earth's past. Insights focused through the geology of Italy, which provides exceptional exposures of rocks recording ancient mass extinction events as well as opportunities to examine current volcanic and tectonic activities and their impact on nearby human populations. Designed to be open to all undergraduate students.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
OSPFLOR 84:
Life in the Balance: Knowing how nutrient intake can match energy expenditure
Review of the anatomy and cellular structure of taste, food absorption and digestion, using the anatomical wax models of the "La Specola" Museum of Zoology and Natural History of the University of Florence. Conditions of anorexia nervosa and obesity as illustrations of imbalances in energy intake and output. Genetic contributions to regulating the physiologic and endocrine adaptations to food restriction or overconsumption. Religious fasting practices in Judaism, Christianity and Islam as examples of fine-tuning the energy equilibrium based on cultural traditions. Nutrient imbalances and links to increased rates of metabolic syndrome and cardiac disease. New research findings related to nutrigenetics and the composition of foods beneficial to health and suitable for modulating the balance between food intake and energy expenditure.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci
OSPFLOR 86:
Stem Cells in Human Development and Regenerative Medicine
Principles and practice of regenerative medicine. Molecular and developmental biology relevant to the understanding of differentiation and development at the molecular, cellular and organismal levels. Production of lines of multipotent and pluripotent stem cells, the conditions necessary to induce their differentiation into specific lineages and cell types, and their clinical applications. State of the art on the development of regenerative therapies for cartilage injury. Aspects of inherited or acquired diseases that could be potentially treated by stem cell therapies. Quality control and quality assurance necessary for the adequate delivery of stem cell based therapies within current legislative frameworks.
Terms: Win
| Units: 4-5
| UG Reqs: GER: DB-NatSci
OSPSANTG 85:
Marine Ecology of Chile and the South Pacific
Relationships among physical processes in the ocean, biological productivity, and the exploitation of resources by high-thropic-level predators including human beings. Characterization of ecological patterns; identification of processes operating on marine systems. Open ocean ecosystems, intertidal and benthic regions of the world's oceans, and ecological research developed along coastal regions, focusing on Chile's 4,000 km coastline.
Terms: Spr
| Units: 5
| UG Reqs: GER: DB-NatSci
PHYSICS 15:
The Nature of the Universe
The structure, origin, and evolution of the major components of the Universe: planets, stars, and galaxies. Emphasis is on the formation of the Sun and planets, the evolution of stars, and the structure and content of the Milky Way galaxy. Topics: cosmic enigmas (dark matter, black holes, pulsars, x-ray sources), star birth and death, and the origins of and search for life in the solar system and beyond.
Terms: Aut, Sum
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 16:
Cosmic Horizons
The origin and evolution of the universe and its contents: stars, galaxies, quasars. The overall structure of the cosmos and the physical laws that govern matter, space, and time. Topics include the evolution of the cosmos from the origin of the elements and the formation of stars and galaxies, exotic astronomical objects (black holes, quasars, supernovae, and gamma ray bursts), dark matter, inflationary cosmology, and the fate of the cosmos.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 17:
Black Holes
Newton's and Einstein's theories of gravitation and their relationship to the predicted properties of black holes. Their formation and detection, and role in galaxies and high-energy jets. Hawking radiation and aspects of quantum gravity.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 18N:
Frontiers in Theoretical Physics and Cosmology
Preference to freshmen. The course will begin with a description of the current standard models of gravitation, cosmology, and elementary particle physics. We will then focus on frontiers of current understanding including investigations of very early universe cosmology, string theory, and the physics of black holes.
Last offered: Winter 2014
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 19:
How Things Work: An Introduction to Physics
Introduction to the principles of physics through familiar objects and phenomena, including airplanes, cameras, computers, engines, refrigerators, lightning, radio, microwave ovens, and fluorescent lights. Estimates of real quantities from simple calculations. Prerequisite: high school algebra and trigonometry.
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 21:
Mechanics and Heat
For biology, social science, and premedical students. Introduction to Newtonian mechanics, fluid mechanics, theory of heat. Prerequisite: high school algebra and trigonometry; calculus not required.
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 21S:
Mechanics and Heat with Laboratory
For biology, social science, and premedical students. Labs are an integrated part of the summer course. Introduction to Newtonian mechanics, fluid mechanics, theory of heat. nPrerequisite: high school algebra and trigonometry; calculus not required.
Terms: Sum
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 23:
Electricity and Optics
Electric charges and currents, magnetism, induced currents; wave motion, interference, diffraction, geometrical optics. Prerequisite: PHYSICS 21.
Terms: Win
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 23S:
Electricity and Optics with Lab
For biology, social science, and premedical students. Labs are an integrated part of the summer courses. Electric charges and currents, magnetism, induced currents; wave motion, interference, diffraction, geometrical optics. nnPrerequisite: PHYSICS 21S or 21.
Terms: Sum
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 25:
Modern Physics
Introduction to modern physics. Relativity, quantum mechanics, atomic theory, radioactivity, nuclear reactions, nuclear structure, high energy physics, elementary particles, astrophysics, stellar evolution, and the big bang. Prerequisite: PHYSICS 23 or consent of instructor.
Terms: Spr
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 41:
Mechanics
How are motions of objects in the physical world determined by laws of physics? Students learn to describe the motion of objects (kinematics) and then understand why motions have the form they do (dynamics). Emphasis on how the important physical principles in mechanics, such as conservation of momentum and energy for translational and rotational motion, follow from just three laws of nature: Newton's laws of motion. Distinction made between fundamental laws of nature and empirical rules that are useful approximations for more complex physics. Problems drawn from examples of mechanics in everyday life. Skills developed in verifying that derived results satisfy criteria for correctness, such as dimensional consistency and expected behavior in limiting cases. Discussions based on language of mathematics, particularly vector representations and operations, and calculus. Physical understanding fostered by peer interaction and demonstrations in lecture, and discussion sections based on interactive group problem solving. Prerequisite: High school physics or concurrent enrollment in PHYSICS 41A. MATH 41 or MATH 51 or CME 100 or equivalent. Minimum corequisite: MATH 42 or equivalent.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 43:
Electricity and Magnetism
What is electricity? What is magnetism? How are they related? How do these phenomena manifest themselves in the physical world? The theory of electricity and magnetism, as codified by Maxwell's equations, underlies much of the observable universe. Students develop both conceptual and quantitative knowledge of this theory. Topics include: electrostatics; magnetostatics; simple AC and DC circuits involving capacitors, inductors, and resistors; integral form of Maxwell's equations; electromagnetic waves. Principles illustrated in the context of modern technologies. Broader scientific questions addressed include: How do physical theories evolve? What is the interplay between basic physical theories and associated technologies? Discussions based on the language of mathematics, particularly differential and integral calculus, and vectors. Physical understanding fostered by peer interaction and demonstrations in lecture, and discussion sections based on interactive group problem solving. Prerequisite: PHYSICS 41 or equivalent. MATH 42 or MATH 51 or CME 100 or equivalent. Recommended corequisite: MATH 52 or CME 102.
Terms: Spr
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 45:
Light and Heat
What is temperature? How do the elementary processes of mechanics, which are intrinsically reversible, result in phenomena that are clearly irreversible when applied to a very large number of particles, the ultimate example being life? In thermodynamics, students discover that the approach of classical mechanics is not sufficient to deal with the extremely large number of particles present in a macroscopic amount of gas. The paradigm of thermodynamics leads to a deeper understanding of real-world phenomena such as energy conversion and the performance limits of thermal engines. In optics, students see how a geometrical approach allows the design of optical systems based on reflection and refraction, while the wave nature of light leads to interference phenomena. The two approaches come together in understanding the diffraction limit of microscopes and telescopes. Discussions based on the language of mathematics, particularly calculus. Physical understanding fostered by peer interaction and demonstrations in lecture, and discussion sections based on interactive group problem solving. Prerequisite: PHYSICS 41 or equivalent. MATH 21 or MATH 42 or MATH 51 or CME 100 or equivalent.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 50:
Astronomy Laboratory and Observational Astronomy
Introduction to observational astronomy emphasizing the use of optical telescopes. Observations of stars, nebulae, and galaxies in laboratory sessions with 16- and 24-inch telescopes at the Stanford Observatory. Meets one evening per week from dusk until well after dark at the Stanford Observatory. No previous physics required. Limited enrollment. Lab.
Terms: Aut, Sum
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-AQR, WAY-SMA
PHYSICS 61:
Mechanics and Special Relativity
(First in a three-part series: PHYSICS 61, PHYSICS 63, PHYSICS 65.) Advanced freshman physics. For students with a strong high school mathematics and physics background contemplating a major in Physics or interested in a rigorous treatment of physics. Special theory of relativity and Newtonian mechanics with multi- variable calculus. Postulates of special relativity, simultaneity, time dilation, length contraction, the Lorentz transformation, causality, and relativistic mechanics. Central forces, contact forces, linear restoring forces. Momentum transport, work, energy, collisions. Angular momentum, torque, moment of inertia in three dimensions. Damped and forced harmonic oscillators. Recommended prerequisites: Mastery of mechanics at the level of AP Physics C and AP Calculus B/C or equivalent. Corequisite: MATH 51.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-FR, WAY-SMA
PHYSICS 63:
Electricity, Magnetism, and Waves
(Second in a three-part advanced freshman physics series: PHYSICS 61, PHYSICS 63, PHYSICS 65.) This course covers the foundations of electricity and magnetism for students with a strong high school mathematics and physics background, who are contemplating a major in Physics or Engineering Physics, or are interested in a rigorous treatment of physics. Electricity, magnetism, and waves with some description of optics. Electrostatics and Gauss' law. Electric potential, electric field, conductors, image charges. Other theorems of vector calculus. Electric currents, DC circuits. Moving charges, magnetic field, Ampere's law. Solenoids, transformers, induction, AC circuits, resonance. Relativistic point of view for moving charges. Displacement current, Maxwell's equations. Electromagnetic waves, dielectrics. Diffraction, interference, refraction, reflection, polarization.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-FR, WAY-SMA
PHYSICS 65:
Quantum and Thermal Physics
(Third in a three-part series: PHYSICS 61, PHYSICS 63, PHYSICS 65.) Advanced freshman physics. For students with a strong high school mathematics and physics background contemplating a major in Physics or interested in a rigorous treatment of physics. Introduction to quantum mechanics: matter waves, atomic structure, Schrödinger's equation. Thermodynamics and statistical mechanics: entropy and heat, Boltzmann statistics, quantum statistics. Prerequisites: PHYSICS 61 & PHYSICS 63. Pre- or corequisite: MATH 53.
Terms: Spr
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-FR, WAY-SMA
PHYSICS 70:
Foundations of Modern Physics
Required for Physics majors who completed the PHYSICS 40 series, or the PHYSICS 60 series prior to 2005-06. Special relativity, the experimental basis of quantum theory, atomic structure, quantization of light, Schrödinger equation, nuclear physics, elementary particles and cosmology. Prerequisites: PHYSICS 41, PHYSICS 43. Pre or corequisite: PHYSICS 45. Recommended: prior or concurrent registration in MATH 53.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 83N:
Physics in the 21st Century
Preference to freshmen. Current topics at the frontier of modern physics. Topics include subatomic particles and the standard model, symmetries in nature, extra dimensions of space, string theory, supersymmetry, the big bang theory of the origin of the universe, black holes, dark matter, and dark energy of the universe. Why the sun shines. Cosmology and inflation.
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
PHYSICS 100:
Introduction to Observational and Laboratory Astronomy
Designed for undergraduate physics majors but open to all students with a calculus-based physics background and some laboratory experience. Students make and analyze observations using telescopes at the Stanford Student Observatory. Topics include navigating the night sky, the physics of stars and galaxies, telescope instrumentation and operation, quantitative error analysis, and effective scientific communication. Limited enrollment. Prerequisites: prior completion of Physics 40 or PHYSICS 60 series.
Terms: Spr
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-AQR, WAY-SMA
PHYSICS 105:
Intermediate Physics Laboratory I: Analog Electronics
Analog electronics including Ohm's law, passive circuits and transistor and op amp circuits, emphasizing practical circuit design skills to prepare undergraduates for laboratory research. Short design project. Minimal use of math and physics, no electronics experience assumed beyond introductory physics. Prerequisite: PHYSICS 43 or PHYSICS 63.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-AQR, WAY-SMA
PHYSICS 110:
Advanced Mechanics (PHYSICS 210)
Lagrangian and Hamiltonian mechanics. Principle of least action, Euler-Lagrange equations. Small oscillations and beyond. Symmetries, canonical transformations, Hamilton-Jacobi theory, action-angle variables. Introduction to classical field theory. Selected other topics, including nonlinear dynamical systems, attractors, chaotic motion. Undergraduates register for Physics 110 (4 units). Graduates register for Physics 210 (3 units). (Graduate student enrollees will be required to complete additional assignments in a format determined by the instructor.) Prerequisites: MATH 131P, and PHYS 112 or MATH elective 104 or higher. Recommended prerequisite: PHYS 130.
Terms: Aut
| Units: 3-4
| UG Reqs: GER: DB-NatSci, WAY-FR, WAY-SMA
PHYSICS 112:
Mathematical Methods of Physics
Theory of complex variables, complex functions, and complex analysis. Fourier series and Fourier transforms. Special functions such as Laguerre, Legendre, and Hermite polynomials, and Bessel functions. The uses of Green's functions. Covers material of MATH 106 and MATH 132 most pertinent to Physics majors. Prerequisites: MATH 50 or 50H series, and MATH 131P or MATH 173.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-FR
PHYSICS 113:
Computational Physics
Numerical methods for solving problems in mechanics, electromagnetism, quantum mechanics, and statistical mechanics. Methods include numerical integration; solutions of ordinary and partial differential equations; solutions of the diffusion equation, Laplace's equation and Poisson's equation with relaxation methods; statistical methods including Monte Carlo techniques; matrix methods and eigenvalue problems. Short introduction to MatLab, used for class examples; class projects may be programmed in any language such as C. Prerequisites: MATH 53 and PHYS 120. Previous programming experience not required.
Terms: Aut
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-AQR, WAY-FR
PHYSICS 120:
Intermediate Electricity and Magnetism I
(First in a two-part series: PHYS 120, PHYS 121.) Vector analysis. Electrostatic fields, including boundary-value problems and multipole expansion. Dielectrics, static and variable magnetic fields, magnetic materials. Maxwell's equations. Prerequisites: PHYSICS 43 or PHYS 63; MATH 52 and MATH 53. Pre- or corequisite: MATH 131P or MATH 173. Recommended corequisite: PHYS 112.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-FR, WAY-SMA
PHYSICS 130:
Quantum Mechanics
The origins of quantum mechanics and wave mechanics. Schrödinger equation and solutions for one-dimensional systems. Commutation relations. Generalized uncertainty principle. Time-energy uncertainty principle. Separation of variables and solutions for three-dimensional systems; application to hydrogen atom. Spherically symmetric potentials and angular momentum eigenstates. Spin angular momentum. Addition of angular momentum. Prerequisites: PHYSICS 65 or PHYSICS 70. Pre- or corequisites: PHYSICS 120 and MATH 131P or MATH 173.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-FR, WAY-SMA
PSYC 135:
Sleep and Dreams (PSYC 235)
This uniquely Stanford science course, that has been taught for over 40 years, will cover how sleep affects our daily lives-- both physical and mental functions of our well being. Focuses on the physiology of non-REM and REM sleep as well as the pathophysiology of highly prevalent sleep disorders. Includes outreach projects and guest lectures by established experts in their fields. Students monitor and analyze their own sleep patterns. At the conclusion of this course students are expected to appreciate the importance of sleep as a cornerstone of their health
Terms: Win, Spr
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SMA
PSYCH 30:
Introduction to Perception
Behavioral and neural aspects of perception focusing on visual and auditory perception. Topics include: scientific methods for studying perception, anatomy and physiology of the visual and auditiory systems, color vision, depth perception, motion perception, stereopsis, visual recognition, pitch and loudness perception, speech perception, and reorganization of the visual system in the blind.
Terms: Aut
| Units: 3
| UG Reqs: GER: DB-NatSci, WAY-SI, WAY-SMA
PSYCH 50:
Introduction to Cognitive Neuroscience
Survey of topics relating brain activity to cognitive processes and behavior. The course begins with an overview of neurophysiology and techniques to measure brain activity. We then discuss perceptual and motor processes before investigating neural responses related to attention, memory, and cognitive control. The course concludes with a discussion of brain processes related to reward, decision making, and social cognition.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SI, WAY-SMA
PSYCH 120:
Cellular Neuroscience: Cell Signaling and Behavior (BIO 153)
Neural interactions underlying behavior. Prerequisites: PSYCH 1 or basic biology.
Terms: Win
| Units: 4
| UG Reqs: GER: DB-NatSci, WAY-SMA
PUBLPOL 122:
Biosecurity and Bioterrorism Response (BIOE 122, SURG 122)
Overview of the most pressing biosecurity issues facing the world today. Guest lecturers have included former Secretary of State Condoleezza Rice, former Special Assistant on BioSecurity to Presidents Clinton and Bush Jr. Dr. Ken Bernard, Chief Medical Officer of the Homeland Security Department Dr. Alex Garza, eminent scientists, innovators and physicians in the field, and leaders of relevant technology companies. How well the US and global healthcare systems are prepared to withstand a pandemic or a bioterrorism attack, how the medical/healthcare field, government, and the technology sectors are involved in biosecurity and pandemic or bioterrorism response and how they interface, the rise of synthetic biology with its promises and threats, global bio-surveillance, making the medical diagnosis, isolation, containment, hospital surge capacity, stockpiling and distribution of countermeasures, food and agriculture biosecurity, new promising technologies for detection of bio-threats and countermeasures. Open to medical, graduate, and undergraduate students. No prior background in biology necessary. This course satisfies the TiS requirement for Engineering students; please check with your major advisor to verify this. 4 units for twice weekly attendance (Mon. and Wed.); additional 1 unit for writing a research paper for 5 units total maximum. PLEASE NOTE: This class will meet for the first time on Wednesday, April 1.
Terms: Spr
| Units: 4-5
| UG Reqs: GER: DB-NatSci, GER:EC-GlobalCom
SURG 122:
Biosecurity and Bioterrorism Response (BIOE 122, PUBLPOL 122)
Overview of the most pressing biosecurity issues facing the world today. Guest lecturers have included former Secretary of State Condoleezza Rice, former Special Assistant on BioSecurity to Presidents Clinton and Bush Jr. Dr. Ken Bernard, Chief Medical Officer of the Homeland Security Department Dr. Alex Garza, eminent scientists, innovators and physicians in the field, and leaders of relevant technology companies. How well the US and global healthcare systems are prepared to withstand a pandemic or a bioterrorism attack, how the medical/healthcare field, government, and the technology sectors are involved in biosecurity and pandemic or bioterrorism response and how they interface, the rise of synthetic biology with its promises and threats, global bio-surveillance, making the medical diagnosis, isolation, containment, hospital surge capacity, stockpiling and distribution of countermeasures, food and agriculture biosecurity, new promising technologies for detection of bio-threats and countermeasures. Open to medical, graduate, and undergraduate students. No prior background in biology necessary. This course satisfies the TiS requirement for Engineering students; please check with your major advisor to verify this. 4 units for twice weekly attendance (Mon. and Wed.); additional 1 unit for writing a research paper for 5 units total maximum. PLEASE NOTE: This class will meet for the first time on Wednesday, April 1.
| Units: 4-5
| UG Reqs: GER: DB-NatSci, GER:EC-GlobalCom
UGXFER NATSCI:
GER DB-NATSCI SUBSTITUTION
| Units: 0-99
| UG Reqs: GER: DB-NatSci
| Repeatable
for credit
UGXFER GER2A1:
GER 2A SUBSTITUTION (1ST)
| Units: 0-99
| UG Reqs: GER: DB-NatSci
| Repeatable
for credit
UGXFER GER2A2:
GER 2A SUBSTITUTION (2ND)
| Units: 0
| UG Reqs: GER: DB-NatSci
| Repeatable
for credit
