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CHEM 10: Exploring Research and Problem Solving Across the Sciences

Development and practice of critical problem solving and study skills using wide variety of scientific examples that illustrate the broad yet integrated nature of current research. Student teams will have the opportunity to explore and present on topics revolving around five central issues: energy, climate change, water resources, medicine, and food & nutrition from a chemical perspective. Course offered in August prior to start of fall quarter.
Terms: Aut | Units: 2

CHEM 25N: Science in the News

Preference to freshmen. Possible topics include: diseases such as avian flu, HIV, and malaria; environmental issues such as climate change, atmospheric pollution, and human population; energy sources in the future; evolution; stem cell research; nanotechnology; and drug development. Focus is on the scientific basis for these topics as a basis for intelligent discussion of societal and political implications. Sources include the popular media and scientific media for the nonspecialist, especially those available on the web.
Terms: Aut | Units: 3 | UG Reqs: WAY-SMA
Instructors: ; Andersen, H. (PI)

CHEM 28N: Science Innovation and Communication

Preference to freshmen. The course will explore evolutionary and revolutionary scientific advances; their consequences to society, biotechnology, and the economy; and mechanisms for communicating science to the public. The course will engage academic and industrial thought leaders and provide an opportunity for students to participate in communicating science to the public.
Terms: Aut | Units: 3
Instructors: ; Wender, P. (PI)

CHEM 31A: Chemical Principles I

For students with moderate or no background in chemistry. Stoichiometry; periodicity; electronic structure and bonding; gases; enthalpy; phase behavior. Emphasis is on skills to address structural and quantitative chemical questions; lab provides practice. Recitation.
Terms: Aut, Sum | Units: 5 | UG Reqs: GER: DB-NatSci, WAY-SMA

CHEM 31AC: Problem Solving in Science

Development and practice of critical problem solving skills using chemical examples. Limited enrollment. Prerequisite: consent of instructor. Corequisite: CHEM 31A.
Terms: Aut | Units: 1

CHEM 31X: Chemical Principles Accelerated

Accelerated; for students with substantial chemistry background. Chemical equilibria concepts, equilibrium constants, acids and bases, chemical thermodynamics, quantum concepts, models of ionic and covalent bonding, atomic and molecular orbital theory, periodicity, and bonding properties of matter. Recitation. Prerequisites: AP chemistry score of 5 or passing score on chemistry placement test, and AP Calculus AB score of 4 or Math 20 or Math 41. Recommended: high school physics.
Terms: Aut | Units: 5 | UG Reqs: GER: DB-NatSci, WAY-SMA
Instructors: ; Cox, C. (PI); Zare, R. (PI)

CHEM 35: Synthetic and Physical Organic Chemistry

The structure and reactivity of mono- and polyfunctionalized molecules; retrosynthetic analysis and multi-step chemical synthesis. Course will emphasize deductive logic and reasoning skills through conceptual learning. Students gain an appreciation for the profound impact of organic chemistry on humankind in fields ranging from biology and medicine to gastronomy, agriculture, and materials science. A three hour lab section provides hands on experience with modern chemical methods for preparative and analytical chemistry. Prerequisite: Chem 33
Terms: Aut, Spr | Units: 5 | UG Reqs: GER: DB-NatSci

CHEM 110: Directed Instruction/Reading

Undergraduates pursue a reading program under supervision of a faculty member in Chemistry; may also involve participation in lab. Prerequisites: superior work in 31A,B, 31X, or 33; and consent of instructor.
Terms: Aut, Win, Spr, Sum | Units: 1-2 | Repeatable 4 times (up to 8 units total)

CHEM 130: Organic and Bio-organic Chemistry Laboratory

Intermediate organic and bio-organic chemistry laboratory, including synthesis and spectroscopy. Nobel prize winning reactions and characterization techniques, such as Diels-Alder and modified Wittig reactions, as well as IR, NMR, and GCMS; Biodiesel synthesis and lipid characterization. Prerequisite: Chem 35 taken in Aut 2014-15 or later, or Chem 35 and 36. Corequisite: 131.
Terms: Aut, Win | Units: 3 | UG Reqs: GER: DB-NatSci
Instructors: ; Vollmer-Snarr, H. (PI)

CHEM 131: Organic Polyfunctional Compounds

Aromatic compounds, polysaccharides, amino acids, proteins, natural products, dyes, purines, pyrimidines, nucleic acids, and polymers. Prerequisite: 35.
Terms: Aut, Win | Units: 3 | UG Reqs: GER: DB-NatSci
Instructors: ; Kool, E. (PI); Xia, Y. (PI)

CHEM 150: Single-Crystal X-ray Diffraction (CHEM 250)

Practical X-ray crystallography of discrete molecules, which will emphasize crystal growth, measurement strategies, structure solution and refinement, and report generation. Example structures will include absolute configuration of organic compounds containing only second row atoms, metal containing complexes, and small molecule compounds with disorder. Students will gain knowledge of the underlying theory and concepts for each step of x-ray structural determination.
Terms: Aut | Units: 3
Instructors: ; Maclaren, J. (PI)

CHEM 173: Physical Chemistry II

Introduction to quantum chemistry: the basic principles of wave mechanics, the harmonic oscillator, the rigid rotator, infrared and microwave spectroscopy, the hydrogen atom, atomic structure, molecular structure, valence theory. Prerequisites: CHEM 171; CME 102, 104 or MATH 53; PHYSICS 41, 43.
Terms: Aut | Units: 3 | UG Reqs: GER: DB-NatSci
Instructors: ; Martinez, T. (PI)

CHEM 174: Electrochemical Measurements Lab (CHEM 274)

Introduction to modern electrochemical measurement in a hands-on, laboratory setting. Students assemble and use electrochemical cells including indicator, reference, working and counter electrodes, with macro, micro and ultramicro geometries, salt bridges, ion-selective membranes, electrometers, potentiostats, galvanostats, and stationary and rotated disk electrodes. The later portion of the course will involve a student-generated project to experimentally characterize some electrochemical system. Prerequisites: 134, 171, MATH 51, PHYSICS 44 or equivalent.
Terms: Aut | Units: 3 | UG Reqs: GER: DB-NatSci
Instructors: ; Chidsey, C. (PI)

CHEM 181: Biochemistry I (BIO 188, CHEMENG 181, CHEMENG 281)

Structure and function of major classes of biomolecules, including proteins, carbohydrates and lipids. Mechanistic analysis of properties of proteins including catalysis, signal transduction and membrane transport. Students will also learn to critically analyze data from the primary biochemical literature. Satisfies Central Menu Area 1 for Bio majors. (CHEMENG offerings formerly listed as 188/288.) Prerequisites: CHEM 33, 35, 131, and 135 or 171.
Terms: Aut | Units: 3 | UG Reqs: GER: DB-NatSci

CHEM 190: Advanced Undergraduate Research

Limited to undergraduates who have completed Chem 35 and/or Chem 134, or by special arrangement with a faculty member. May be repeated 8 times for a max of 27 units. Prerequisite: 35 or 134. Corequisite: 300.
Terms: Aut, Win, Spr, Sum | Units: 1-5 | Repeatable 9 times (up to 27 units total)

CHEM 196: Creating New Ventures in Engineering and Science-based Industries (CHEM 296, CHEMENG 196, CHEMENG 296)

Open to seniors and graduate students interested in the creation of new ventures and entrepreneurship in engineering and science intensive industries such as chemical, energy, materials, bioengineering, environmental, clean-tech, pharmaceuticals, medical, and biotechnology. Exploration of the dynamics, complexity, and challenges that define creating new ventures, particularly in industries that require long development times, large investments, integration across a wide range of technical and non-technical disciplines, and the creation and protection of intellectual property. Covers business basics, opportunity viability, creating start-ups, entrepreneurial leadership, and entrepreneurship as a career. Teaching methods include lectures, case studies, guest speakers, and individual and team projects.
Terms: Aut | Units: 3

CHEM 200: Research and Special Advanced Work

Qualified graduate students undertake research or advanced lab work not covered by listed courses under the direction of a member of the teaching staff. For research and special work, students register for 200.
Terms: Aut, Win, Spr, Sum | Units: 1-15 | Repeatable for credit

CHEM 221: Advanced Organic Chemistry

Physical organic chemistry: molecular structures, bonding, and non-covalent interactions; thermodynamic and kinetic understanding of reactivity and reaction mechanism. Prerequisites: 137, 175.
Terms: Aut | Units: 3
Instructors: ; Xia, Y. (PI)

CHEM 225T: Advanced Organic Chemistry

Organic reactions, new synthetic methods with special attention to catalysis and atom economy, selectivity analysis, and exercises in the syntheses of complex molecules.
Terms: Aut | Units: 3
Instructors: ; Trost, B. (PI)

CHEM 229: Organic Chemistry Seminar

Required of graduate students majoring in organic chemistry. Students giving seminars register for 231.
Terms: Aut, Win, Spr | Units: 1 | Repeatable 11 times (up to 11 units total)

CHEM 231: Organic Chemistry Seminar Presentation

Required of graduate students majoring in organic chemistry for the year in which they present their organic seminar. Second-year students must enroll all quarters.
Terms: Aut, Win, Spr | Units: 1 | Repeatable 3 times (up to 3 units total)
Instructors: ; Xia, Y. (PI); Kuhn, R. (GP)

CHEM 233A: Creativity in Organic Chemistry

Required of second- and third-year Ph.D. candidates in organic chemistry. The art of formulating, writing, and orally defending a research progress report (A) and two research proposals (B, C). Second-year students register for A and B; third-year students register for C. A: Aut, B: Spr, C: Spr
Terms: Aut | Units: 1
Instructors: ; Xia, Y. (PI); Kuhn, R. (GP)

CHEM 250: Single-Crystal X-ray Diffraction (CHEM 150)

Practical X-ray crystallography of discrete molecules, which will emphasize crystal growth, measurement strategies, structure solution and refinement, and report generation. Example structures will include absolute configuration of organic compounds containing only second row atoms, metal containing complexes, and small molecule compounds with disorder. Students will gain knowledge of the underlying theory and concepts for each step of x-ray structural determination.
Terms: Aut | Units: 3
Instructors: ; Maclaren, J. (PI)

CHEM 251: Advanced Inorganic Chemistry

Primarily intended for first-year graduate students, as a review of some of the basic concepts in inorganic chemistry. Specific topics covered will include: symmetry, group theory, electronic structure of molecules and solids, and reactivity of coordination complexes. Prerequisite: Advanced undergraduate-level inorganic chemistry
Terms: Aut | Units: 3
Instructors: ; Karunadasa, H. (PI)

CHEM 258C: Research Progress in Inorganic Chemistry

Required of all second-, third-, and fourth-year Ph.D. candidates in inorganic chemistry. Students present their research progress in written and oral forms (A); present a seminar in the literature of the field of research (B); and formulate, write, and orally defend a research proposal (C). Second-year students register for A; third-year students register for B; fourth-year students register for C.
Terms: Aut, Win | Units: 1
Instructors: ; Solomon, E. (PI)

CHEM 259: Inorganic Chemistry Seminar

Required of graduate students majoring in inorganic chemistry.
Terms: Aut, Win, Spr | Units: 1 | Repeatable 15 times (up to 15 units total)
Instructors: ; Solomon, E. (PI)

CHEM 271: Advanced Physical Chemistry

The principles of quantum mechanics. General formulation, mathematical methods, and applications of quantum theory. Exactly solvable problems and approximate methods including time independent perturbation theory and the variational method. Time dependent methods including exactly solvable problems, time dependent perturbation theory, and density matrix formalism. Different representations of quantum theory including the Schrödinger, matrix, and density matrix methods. Absorption and emission of radiation Angular momentum. Atomic structure calculations and simple molecular structure methods. Prerequisite: 175 or equivalent course.
Terms: Aut | Units: 3
Instructors: ; Fayer, M. (PI)

CHEM 274: Electrochemical Measurements Lab (CHEM 174)

Introduction to modern electrochemical measurement in a hands-on, laboratory setting. Students assemble and use electrochemical cells including indicator, reference, working and counter electrodes, with macro, micro and ultramicro geometries, salt bridges, ion-selective membranes, electrometers, potentiostats, galvanostats, and stationary and rotated disk electrodes. The later portion of the course will involve a student-generated project to experimentally characterize some electrochemical system. Prerequisites: 134, 171, MATH 51, PHYSICS 44 or equivalent.
Terms: Aut | Units: 3
Instructors: ; Chidsey, C. (PI)

CHEM 279: Physical Chemistry Seminar

Required of graduate students majoring in physical chemistry. May be repeated for credit.
Terms: Aut, Win, Spr | Units: 1 | Repeatable 15 times (up to 15 units total)
Instructors: ; Markland, T. (PI)

CHEM 296: Creating New Ventures in Engineering and Science-based Industries (CHEM 196, CHEMENG 196, CHEMENG 296)

Open to seniors and graduate students interested in the creation of new ventures and entrepreneurship in engineering and science intensive industries such as chemical, energy, materials, bioengineering, environmental, clean-tech, pharmaceuticals, medical, and biotechnology. Exploration of the dynamics, complexity, and challenges that define creating new ventures, particularly in industries that require long development times, large investments, integration across a wide range of technical and non-technical disciplines, and the creation and protection of intellectual property. Covers business basics, opportunity viability, creating start-ups, entrepreneurial leadership, and entrepreneurship as a career. Teaching methods include lectures, case studies, guest speakers, and individual and team projects.
Terms: Aut | Units: 3

CHEM 299: Teaching of Chemistry

Required of all teaching assistants in Chemistry. Techniques of teaching chemistry by means of lectures and labs.
Terms: Aut, Win, Spr | Units: 1-3 | Repeatable for credit
Instructors: ; Brennan, M. (PI)

CHEM 300: Department Colloquium

Required of graduate students. May be repeated for credit.
Terms: Aut, Win, Spr | Units: 1 | Repeatable 15 times (up to 15 units total)

CHEM 301: Research in Chemistry

Required of graduate students who have passed the qualifying examination. Open to qualified graduate students with the consent of the major professor. Research seminars and directed reading deal with newly developing areas in chemistry and experimental techniques. May be repeated for credit. Search for adviser name on Axess.
Terms: Aut, Win, Spr, Sum | Units: 2 | Repeatable for credit

CHEM 459: Frontiers in Interdisciplinary Biosciences (BIO 459, BIOC 459, BIOE 459, CHEMENG 459, PSYCH 459)

Students register through their affiliated department; otherwise register for CHEMENG 459. For specialists and non-specialists. Sponsored by the Stanford BioX Program. Three seminars per quarter address scientific and technical themes related to interdisciplinary approaches in bioengineering, medicine, and the chemical, physical, and biological sciences. Leading investigators from Stanford and the world present breakthroughs and endeavors that cut across core disciplines. Pre-seminars introduce basic concepts and background for non-experts. Registered students attend all pre-seminars; others welcome. See http://biox.stanford.edu/courses/459.html. Recommended: basic mathematics, biology, chemistry, and physics.
Terms: Aut, Win, Spr | Units: 1 | Repeatable for credit
Instructors: ; Robertson, C. (PI)
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