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IMMUNOL 199: Undergraduate Research

Presentations and discussions focus on how current research has progressed from the classic findings in Immunology. This third course in the Immunology core curriculum develops effective presentation skills that are appropriate for a given audience and situation. Students will gain experience in developing and presenting chalk talks, formal presentations, and the all-important elevator pitch on current research. Students will benefit from peer, TA and instructor feedback on all presentations.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit
Instructors: ; Alizadeh, A. (PI); Arvin, A. (PI); Bendall, S. (PI); Blish, C. (PI); Bollyky, P. (PI); Boothroyd, J. (PI); Boyd, S. (PI); Butcher, E. (PI); Butte, A. (PI); Butte, M. (PI); Chen, C. (PI); Chien, Y. (PI); Chu, G. (PI); Cleary, M. (PI); Contag, C. (PI); Crabtree, G. (PI); Davis, M. (PI); Dhabhar, F. (PI); Engleman, E. (PI); Fathman, C. (PI); Felsher, D. (PI); Fire, A. (PI); Fontaine, M. (PI); Galli, S. (PI); Garcia, C. (PI); Goronzy, J. (PI); Habtezion, A. (PI); Han, M. (PI); Herzenberg, L. (PI); Hsieh, M. (PI); Idoyaga, J. (PI); Jardetzky, T. (PI); Jones, P. (PI); Khatri, P. (PI); Kim, P. (PI); Kirkegaard, K. (PI); Kohrt, H. (PI); Krams, S. (PI); Kuo, C. (PI); Lee, P. (PI); Levy, R. (PI); Levy, S. (PI); Lewis, D. (PI); Lewis, R. (PI); Maecker, H. (PI); Majeti, R. (PI); Mallick, P. (PI); Martinez, O. (PI); McDevitt, H. (PI); Mellins, E. (PI); Meyer, E. (PI); Michie, S. (PI); Mignot, E. (PI); Miklos, D. (PI); Monack, D. (PI); Nadeau, K. (PI); Nayak, J. (PI); Negrin, R. (PI); Nicolls, M. (PI); Nolan, G. (PI); Palmer, T. (PI); Parham, P. (PI); Quake, S. (PI); Robinson, B. (PI); Roncarolo, M. (PI); Sarwal, M. (PI); Schneider, D. (PI); Shafer, R. (PI); Shizuru, J. (PI); Snyder, M. (PI); Sobel, R. (PI); Steinman, L. (PI); Strober, S. (PI); Sunwoo, J. (PI); Utz, P. (PI); Weissman, I. (PI); Weyand, C. (PI); Winslow, M. (PI); Wu, J. (PI); Wyss-Coray, T. (PI); Gess, C. (GP); Jones, D. (GP)

IMMUNOL 202: Advanced Immunology II (MCP 202)

Readings of immunological literature. Classic problems and emerging areas based on primary literature. Student and faculty presentations. Prerequisite: IMMUNOL 201/MI 211.
Terms: Spr | Units: 3
Instructors: ; Blish, C. (PI); Garcia, C. (PI); Moore PhD, A. (TA)

IMMUNOL 204: Innate Immunology (MI 104, MI 204)

Innate immune mechanisms as the only defenses used by the majority of multicellular organisms. Topics include Toll signaling, NK cells, complement, antimicrobial peptides, phagocytes, neuroimmunity, community responses to infection, and the role of native flora in immunity. How microbes induce and defeat innate immune reactions, including examples from vertebrates, invertebrates, and plants.
Terms: Aut, Spr | Units: 3
Instructors: ; Schneider, D. (PI); Amberg-Johnson, K. (TA); Boucher, M. (TA); Diep, J. (TA)

IMMUNOL 206: Introduction to Applied Computational Tools in Immunology

Introduction to computational tools for analyses of immunological data sets, including but not limited to single-cell data such as that from flow cytometry of CyTOF, as well as genomic anlayses. Students become familiar with major web-based databases and analysis suites for immunological and genomic data; gain a working knowledge of the major software/algorithms for working with major data types, and be able to apply at least one computational tool in these areas to analyze a public data set.
Terms: Win, Spr | Units: 1-2
Instructors: ; Chien, Y. (PI); Maecker, H. (PI)

IMMUNOL 207: Essential Methods in Computational and Systems Immunology

Introduction to the major underpinnings of systems immunology: first principles of development of computational approaches to immunological questions and research; details of the algorithms and statistical principles underlying commonly used tools; aspects of study design and analysis of data sets. Prerequisites: CS106a and CS161 strongly recommended.
Terms: Spr | Units: 3
Instructors: ; Khatri, P. (PI); Mallick, P. (PI)

IMMUNOL 209: Translational Immunology

(Open to medical students in the Immunology concentration, graduate students, undergraduates by consent of instructor) Journal style format focusing on current basic immunology research and how it is translated into immunotherapies and clinical trials. Topics include hematopoiesis, transplantation, tolerance, immune monitoring, vaccination, autoimmunity and antibodies, rheumatoid arthritis, chronic pulmonary disease, and asthma. May be repeated for credit.
Terms: Aut, Win, Spr | Units: 1 | Repeatable for credit
Instructors: ; Miklos, D. (PI)

IMMUNOL 210: Immunology Research Seminars for Medical Students

Required for medical students selecting the Immunology Concentration. Attendance at a minimum of ten seminars related to immunology outside of required medical school classes. A one-page essay on each seminar, what was presented and how it relates to a clinical immunologic problem, is required.
Terms: Aut, Win, Spr, Sum | Units: 2 | Repeatable for credit
Instructors: ; Miklos, D. (PI)

IMMUNOL 215: Principles of Biological Technologies (MI 215)

The principles underlying novel as well as commonly utilized techniques to answer biological questions. Lectures and primary literature critiques on topics such as fluorescence microscopy, including applications such as FRET and single-cell analysis; human and murine genetic analysis; FACS; proteomics and analysis of noncoding RNAs. Class participation is emphasized. Prerequisite: biochemistry. Required of first-year graduate students in Microbiology and Immunology and the Immunology program.
Terms: Spr | Units: 3
Instructors: ; Sarnow, P. (PI); Blackburn-Marino, N. (TA); Fragiadakis, G. (TA)

IMMUNOL 280: Early Clinical Experience in Immunology

Clinical observation experience for medical students in the Immunology Scholarly Concentration. At the end of the observation period, which may span over one to two quarters, the student submits a case observation paper to his/her faculty sponsor. Prerequisite: IMMUNOL 205.
Terms: Aut, Win, Spr, Sum | Units: 1-3 | Repeatable for credit
Instructors: ; Alizadeh, A. (PI); Arvin, A. (PI); Bendall, S. (PI); Blish, C. (PI); Bollyky, P. (PI); Boothroyd, J. (PI); Boyd, S. (PI); Butcher, E. (PI); Butte, A. (PI); Butte, M. (PI); Chen, C. (PI); Chien, Y. (PI); Chu, G. (PI); Cleary, M. (PI); Contag, C. (PI); Crabtree, G. (PI); Davis, M. (PI); Dhabhar, F. (PI); Engleman, E. (PI); Fathman, C. (PI); Felsher, D. (PI); Fire, A. (PI); Fontaine, M. (PI); Galli, S. (PI); Garcia, C. (PI); Goronzy, J. (PI); Habtezion, A. (PI); Han, M. (PI); Herzenberg, L. (PI); Hsieh, M. (PI); Idoyaga, J. (PI); Jardetzky, T. (PI); Jones, P. (PI); Khatri, P. (PI); Kim, P. (PI); Kirkegaard, K. (PI); Kohrt, H. (PI); Krams, S. (PI); Kuo, C. (PI); Lee, P. (PI); Levy, R. (PI); Levy, S. (PI); Lewis, D. (PI); Lewis, R. (PI); Maecker, H. (PI); Majeti, R. (PI); Mallick, P. (PI); Martinez, O. (PI); McDevitt, H. (PI); Mellins, E. (PI); Meyer, E. (PI); Michie, S. (PI); Mignot, E. (PI); Miklos, D. (PI); Monack, D. (PI); Nadeau, K. (PI); Nayak, J. (PI); Negrin, R. (PI); Nicolls, M. (PI); Nolan, G. (PI); Palmer, T. (PI); Parham, P. (PI); Quake, S. (PI); Robinson, B. (PI); Roncarolo, M. (PI); Sarwal, M. (PI); Schneider, D. (PI); Shafer, R. (PI); Shizuru, J. (PI); Snyder, M. (PI); Sobel, R. (PI); Steinman, L. (PI); Strober, S. (PI); Sunwoo, J. (PI); Utz, P. (PI); Weissman, I. (PI); Weyand, C. (PI); Wu, J. (PI); Wyss-Coray, T. (PI); Gess, C. (GP); Jones, D. (GP)

IMMUNOL 290: Teaching in Immunology

Practical experience in teaching by serving as a teaching assistant in an immunology course. Unit values are allotted individually to reflect the level of teaching responsibility assigned to the student. May be repeated for credit.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit
Instructors: ; Alizadeh, A. (PI); Arvin, A. (PI); Bendall, S. (PI); Blish, C. (PI); Bollyky, P. (PI); Boothroyd, J. (PI); Boyd, S. (PI); Butcher, E. (PI); Butte, A. (PI); Butte, M. (PI); Chen, C. (PI); Chien, Y. (PI); Chu, G. (PI); Cleary, M. (PI); Contag, C. (PI); Crabtree, G. (PI); Davis, M. (PI); Dhabhar, F. (PI); Engleman, E. (PI); Fathman, C. (PI); Felsher, D. (PI); Fire, A. (PI); Fontaine, M. (PI); Galli, S. (PI); Garcia, C. (PI); Goronzy, J. (PI); Habtezion, A. (PI); Han, M. (PI); Herzenberg, L. (PI); Hsieh, M. (PI); Idoyaga, J. (PI); Jardetzky, T. (PI); Jones, P. (PI); Khatri, P. (PI); Kim, P. (PI); Kirkegaard, K. (PI); Kohrt, H. (PI); Krams, S. (PI); Kuo, C. (PI); Lee, P. (PI); Levy, R. (PI); Levy, S. (PI); Lewis, D. (PI); Lewis, R. (PI); Maecker, H. (PI); Majeti, R. (PI); Mallick, P. (PI); Martinez, O. (PI); McDevitt, H. (PI); Mellins, E. (PI); Meyer, E. (PI); Michie, S. (PI); Mignot, E. (PI); Miklos, D. (PI); Monack, D. (PI); Nadeau, K. (PI); Nayak, J. (PI); Negrin, R. (PI); Nicolls, M. (PI); Nolan, G. (PI); Palmer, T. (PI); Parham, P. (PI); Quake, S. (PI); Robinson, B. (PI); Roncarolo, M. (PI); Sarwal, M. (PI); Schneider, D. (PI); Shafer, R. (PI); Shizuru, J. (PI); Snyder, M. (PI); Sobel, R. (PI); Steinman, L. (PI); Strober, S. (PI); Sunwoo, J. (PI); Utz, P. (PI); Weissman, I. (PI); Weyand, C. (PI); Wu, J. (PI); Wyss-Coray, T. (PI); Gess, C. (GP); Jones, D. (GP); Panganiban, M. (GP)

IMMUNOL 299: Directed Reading in Immunology

Prerequisite: consent of instructor.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit
Instructors: ; Alizadeh, A. (PI); Arvin, A. (PI); Bendall, S. (PI); Blish, C. (PI); Bollyky, P. (PI); Boothroyd, J. (PI); Boyd, S. (PI); Butcher, E. (PI); Butte, A. (PI); Butte, M. (PI); Chen, C. (PI); Chien, Y. (PI); Chu, G. (PI); Cleary, M. (PI); Contag, C. (PI); Crabtree, G. (PI); Davis, M. (PI); Dhabhar, F. (PI); Engleman, E. (PI); Fathman, C. (PI); Felsher, D. (PI); Fire, A. (PI); Fontaine, M. (PI); Galli, S. (PI); Garcia, C. (PI); Goronzy, J. (PI); Habtezion, A. (PI); Han, M. (PI); Herzenberg, L. (PI); Hsieh, M. (PI); Idoyaga, J. (PI); Jardetzky, T. (PI); Jones, P. (PI); Khatri, P. (PI); Kim, P. (PI); Kirkegaard, K. (PI); Kohrt, H. (PI); Krams, S. (PI); Kuo, C. (PI); Lee, P. (PI); Levy, R. (PI); Levy, S. (PI); Lewis, D. (PI); Lewis, R. (PI); Maecker, H. (PI); Majeti, R. (PI); Mallick, P. (PI); Martinez, O. (PI); McDevitt, H. (PI); Mellins, E. (PI); Meyer, E. (PI); Michie, S. (PI); Mignot, E. (PI); Miklos, D. (PI); Monack, D. (PI); Nadeau, K. (PI); Nayak, J. (PI); Negrin, R. (PI); Nicolls, M. (PI); Nolan, G. (PI); Palmer, T. (PI); Parham, P. (PI); Quake, S. (PI); Robinson, B. (PI); Roncarolo, M. (PI); Sarwal, M. (PI); Schneider, D. (PI); Shafer, R. (PI); Shizuru, J. (PI); Snyder, M. (PI); Sobel, R. (PI); Steinman, L. (PI); Strober, S. (PI); Sunwoo, J. (PI); Utz, P. (PI); Weissman, I. (PI); Weyand, C. (PI); Wu, J. (PI); Wyss-Coray, T. (PI); Gess, C. (GP); Jones, D. (GP)

IMMUNOL 305: Immunology Journal Club

Required of first- to fourth-year graduate students. Graduate students present and discuss recent papers in the literature. May be repeated for credit.
Terms: Aut, Win, Spr | Units: 1 | Repeatable for credit
Instructors: ; Martinez, O. (PI)

IMMUNOL 311: Seminar in Immunology

Enrollment limited to Ph.D., M.D./Ph.D., and medical students whose scholarly concentrations are in Immunology. Current research topics.
Terms: Aut, Win, Spr | Units: 1 | Repeatable for credit
Instructors: ; Alizadeh, A. (PI); Martinez, O. (PI); Panganiban, M. (GP)

IMMUNOL 311A: Discussions in Immunology

Students discuss papers of speakers in 311, and meet with the speakers. Corequisite: 311.
Terms: Aut, Win, Spr | Units: 1 | Repeatable for credit

IMMUNOL 399: Graduate Research

For Ph.D., M.D./Ph.D. students, and medical students whose scholarly concentrations are in Immunology.
Terms: Aut, Win, Spr, Sum | Units: 1-18 | Repeatable for credit
Instructors: ; Alizadeh, A. (PI); Arvin, A. (PI); Bendall, S. (PI); Blish, C. (PI); Bollyky, P. (PI); Boothroyd, J. (PI); Boyd, S. (PI); Butcher, E. (PI); Butte, A. (PI); Butte, M. (PI); Chen, C. (PI); Chien, Y. (PI); Chu, G. (PI); Cleary, M. (PI); Contag, C. (PI); Crabtree, G. (PI); Davis, M. (PI); Dhabhar, F. (PI); Engleman, E. (PI); Fathman, C. (PI); Felsher, D. (PI); Fire, A. (PI); Fontaine, M. (PI); Galli, S. (PI); Garcia, C. (PI); Goronzy, J. (PI); Habtezion, A. (PI); Han, M. (PI); Herzenberg, L. (PI); Hsieh, M. (PI); Idoyaga, J. (PI); Jardetzky, T. (PI); Jones, P. (PI); Khatri, P. (PI); Kim, P. (PI); Kirkegaard, K. (PI); Kohrt, H. (PI); Krams, S. (PI); Kuo, C. (PI); Lee, P. (PI); Levy, R. (PI); Levy, S. (PI); Lewis, D. (PI); Lewis, R. (PI); Maecker, H. (PI); Majeti, R. (PI); Mallick, P. (PI); Martinez, O. (PI); McDevitt, H. (PI); Mellins, E. (PI); Meyer, E. (PI); Michie, S. (PI); Mignot, E. (PI); Miklos, D. (PI); Monack, D. (PI); Nadeau, K. (PI); Nayak, J. (PI); Negrin, R. (PI); Nicolls, M. (PI); Nolan, G. (PI); Palmer, T. (PI); Parham, P. (PI); Quake, S. (PI); Robinson, B. (PI); Roncarolo, M. (PI); Sarwal, M. (PI); Schneider, D. (PI); Shafer, R. (PI); Shizuru, J. (PI); Snyder, M. (PI); Sobel, R. (PI); Steinman, L. (PI); Strober, S. (PI); Sunwoo, J. (PI); Utz, P. (PI); Weissman, I. (PI); Weyand, C. (PI); Winslow, M. (PI); Wu, J. (PI); Wyss-Coray, T. (PI); Gess, C. (GP); Jones, D. (GP)

IMMUNOL 801: TGR Project

Terms: Aut, Win, Spr, Sum | Units: 0 | Repeatable for credit
Instructors: ; Alizadeh, A. (PI); Arvin, A. (PI); Bendall, S. (PI); Blish, C. (PI); Bollyky, P. (PI); Boothroyd, J. (PI); Boyd, S. (PI); Butcher, E. (PI); Butte, A. (PI); Butte, M. (PI); Chen, C. (PI); Chien, Y. (PI); Chu, G. (PI); Cleary, M. (PI); Contag, C. (PI); Crabtree, G. (PI); Davis, M. (PI); Dhabhar, F. (PI); Engleman, E. (PI); Fathman, C. (PI); Felsher, D. (PI); Fire, A. (PI); Fontaine, M. (PI); Galli, S. (PI); Garcia, C. (PI); Goronzy, J. (PI); Habtezion, A. (PI); Han, M. (PI); Herzenberg, L. (PI); Hsieh, M. (PI); Idoyaga, J. (PI); Jardetzky, T. (PI); Jones, P. (PI); Khatri, P. (PI); Kim, P. (PI); Kirkegaard, K. (PI); Kohrt, H. (PI); Krams, S. (PI); Kuo, C. (PI); Lee, P. (PI); Levy, R. (PI); Levy, S. (PI); Lewis, D. (PI); Lewis, R. (PI); Maecker, H. (PI); Majeti, R. (PI); Mallick, P. (PI); Martinez, O. (PI); McDevitt, H. (PI); Mellins, E. (PI); Meyer, E. (PI); Michie, S. (PI); Mignot, E. (PI); Miklos, D. (PI); Monack, D. (PI); Nadeau, K. (PI); Nayak, J. (PI); Negrin, R. (PI); Nicolls, M. (PI); Nolan, G. (PI); Palmer, T. (PI); Parham, P. (PI); Quake, S. (PI); Robinson, B. (PI); Roncarolo, M. (PI); Sarwal, M. (PI); Schneider, D. (PI); Shafer, R. (PI); Shizuru, J. (PI); Snyder, M. (PI); Sobel, R. (PI); Steinman, L. (PI); Strober, S. (PI); Sunwoo, J. (PI); Utz, P. (PI); Weissman, I. (PI); Weyand, C. (PI); Wu, J. (PI); Wyss-Coray, T. (PI); Gess, C. (GP); Jones, D. (GP)

IMMUNOL 802: TGR Dissertation

Terms: Aut, Win, Spr, Sum | Units: 0 | Repeatable for credit
Instructors: ; Alizadeh, A. (PI); Arvin, A. (PI); Bendall, S. (PI); Blish, C. (PI); Bollyky, P. (PI); Boothroyd, J. (PI); Boyd, S. (PI); Butcher, E. (PI); Butte, A. (PI); Butte, M. (PI); Chen, C. (PI); Chien, Y. (PI); Chu, G. (PI); Cleary, M. (PI); Contag, C. (PI); Crabtree, G. (PI); Davis, M. (PI); Dhabhar, F. (PI); Engleman, E. (PI); Fathman, C. (PI); Felsher, D. (PI); Fire, A. (PI); Fontaine, M. (PI); Galli, S. (PI); Garcia, C. (PI); Goronzy, J. (PI); Habtezion, A. (PI); Han, M. (PI); Herzenberg, L. (PI); Hsieh, M. (PI); Idoyaga, J. (PI); Jardetzky, T. (PI); Jones, P. (PI); Khatri, P. (PI); Kim, P. (PI); Kirkegaard, K. (PI); Kohrt, H. (PI); Krams, S. (PI); Kuo, C. (PI); Lee, P. (PI); Levy, R. (PI); Levy, S. (PI); Lewis, D. (PI); Lewis, R. (PI); Maecker, H. (PI); Majeti, R. (PI); Mallick, P. (PI); Martinez, O. (PI); McDevitt, H. (PI); Mellins, E. (PI); Meyer, E. (PI); Michie, S. (PI); Mignot, E. (PI); Miklos, D. (PI); Monack, D. (PI); Nadeau, K. (PI); Nayak, J. (PI); Negrin, R. (PI); Nicolls, M. (PI); Nolan, G. (PI); Palmer, T. (PI); Parham, P. (PI); Quake, S. (PI); Robinson, B. (PI); Roncarolo, M. (PI); Sarwal, M. (PI); Schneider, D. (PI); Shafer, R. (PI); Shizuru, J. (PI); Snyder, M. (PI); Sobel, R. (PI); Steinman, L. (PI); Strober, S. (PI); Sunwoo, J. (PI); Utz, P. (PI); Weissman, I. (PI); Weyand, C. (PI); Wu, J. (PI); Wyss-Coray, T. (PI); Gess, C. (GP); Jones, D. (GP)
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