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BIOE 42: Physical Biology

BIOE 42 is designed to introduce students to general engineering principles that have emerged from theory and experiments in biology. Topics covered will cover the scales from molecules to cells to organisms, including fundamental principles of entropy, diffusion, and continuum mechanics. These topics will link to several biological questions, including DNA organization, ligand binding, cytoskeletal mechanics, and the electromagnetic origin of nerve impulses. In all cases, students will learn to develop toy models that can explain quantitative measurements of the function of biological systems. Prerequisites: MATH 19, 20, 21 CHEM 31A, B (or 31X), PHYSICS 41; strongly recommended: CS 106A, CME 100 or MATH 51, and CME 106; or instructor approval.
Terms: Spr | Units: 4 | UG Reqs: WAY-AQR, WAY-SMA

CME 102: Ordinary Differential Equations for Engineers (ENGR 155A)

Analytical and numerical methods for solving ordinary differential equations arising in engineering applications are presented. For analytical methods students learn to solve linear and non-linear first order ODEs; linear second order ODEs; and Laplace transforms. Numerical methods using MATLAB programming tool kit are also introduced to solve various types of ODEs including: first and second order ODEs, higher order ODEs, systems of ODEs, initial and boundary value problems, finite differences, and multi-step methods. This also includes accuracy and linear stability analyses of various numerical algorithms which are essential tools for the modern engineer. This class is foundational for professional careers in engineering and as a preparation for more advanced classes at the undergraduate and graduate levels. Prerequisites: knowledge of single-variable calculus equivalent to the content of Math 19-21 (e.g., 5 on Calc BC, 4 on Calc BC with Math 21, 5 on Calc AB with Math 21). Placement diagnostic (recommendation non-binding) at: https://exploredegrees.stanford.edu/undergraduatedegreesandprograms/#aptext.
Terms: Aut, Win | Units: 5 | UG Reqs: GER:DB-Math, WAY-FR

ENGR 21: Engineering of Systems

A high-level look at techniques for analyzing and designing complex, multidisciplinary engineering systems, such as aircraft, spacecraft, automobiles, power plants, cellphones, robots, biomedical devices, and many others. The need for multi-level design, modeling and simulation approaches, computation-based design, and hardware and software-in-the-loop simulations will be demonstrated through a variety of examples and case studies. Several aspects of system engineering will be applied to the design of large-scale interacting systems and contrasted with subsystems such as hydraulic systems, electrical systems, and brake systems. The use of design-thinking, story-boarding, mockups, sensitivity analysis, simulation, team-based design, and the development of presentation skills will be fostered through several realistic examples in several fields of engineering.
Terms: Spr | Units: 3

ENGR 154: Vector Calculus for Engineers (CME 100)

Computation and visualization using MATLAB. Differential vector calculus: vector-valued functions, analytic geometry in space, functions of several variables, partial derivatives, gradient, linearization, unconstrained maxima and minima, Lagrange multipliers and applications to trajectory simulation, least squares, and numerical optimization. Introduction to linear algebra: matrix operations, systems of algebraic equations with applications to coordinate transformations and equilibrium problems. Integral vector calculus: multiple integrals in Cartesian, cylindrical, and spherical coordinates, line integrals, scalar potential, surface integrals, Green's, divergence, and Stokes' theorems. Numerous examples and applications drawn from classical mechanics, fluid dynamics and electromagnetism. Prerequisites: knowledge of single-variable calculus equivalent to the content of Math 19-21 (e.g., 5 on Calc BC, 4 on Calc BC with Math 21, 5 on Calc AB with Math 21). Placement diagnostic (recommendation non-binding) at: https://exploredegrees.stanford.edu/undergraduatedegreesandprograms/#aptext.
Terms: Aut, Spr | Units: 5 | UG Reqs: GER:DB-Math, WAY-FR

ENGR 155A: Ordinary Differential Equations for Engineers (CME 102)

Analytical and numerical methods for solving ordinary differential equations arising in engineering applications are presented. For analytical methods students learn to solve linear and non-linear first order ODEs; linear second order ODEs; and Laplace transforms. Numerical methods using MATLAB programming tool kit are also introduced to solve various types of ODEs including: first and second order ODEs, higher order ODEs, systems of ODEs, initial and boundary value problems, finite differences, and multi-step methods. This also includes accuracy and linear stability analyses of various numerical algorithms which are essential tools for the modern engineer. This class is foundational for professional careers in engineering and as a preparation for more advanced classes at the undergraduate and graduate levels. Prerequisites: knowledge of single-variable calculus equivalent to the content of Math 19-21 (e.g., 5 on Calc BC, 4 on Calc BC with Math 21, 5 on Calc AB with Math 21). Placement diagnostic (recommendation non-binding) at: https://exploredegrees.stanford.edu/undergraduatedegreesandprograms/#aptext.
Terms: Aut, Win, Sum | Units: 5 | UG Reqs: GER:DB-Math, WAY-FR

MATH 53: Differential Equations with Linear Algebra, Fourier Methods, and Modern Applications

Ordinary differential equations and initial value problems, linear systems of such equations with an emphasis on second-order constant-coefficient equations, stability analysis for non-linear systems (including phase portraits and the role of eigenvalues), and numerical methods. Partial differential equations and boundary-value problems, Fourier series and initial conditions, and Fourier transform for non-periodic phenomena. Throughout the development we harness insights from linear algebra, and software widgets are used to explore course topics on a computer (no coding background is needed). The free e-text provides motivation from applications across a wide array of fields (biology, chemistry, computer science, economics, engineering, and physics) described in a manner not requiring any area-specific expertise, and it has an appendix on Laplace transforms with many worked examples as a complement to the Fourier transform in the main text. Prerequisite: Math 21 and Math 51, or equivalents.
Terms: Aut, Win, Spr | Units: 5 | UG Reqs: GER:DB-Math, WAY-FR
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